Hybridisation between species often leads to inviable or infertile offspring, yet examples of evolutionary successful interspecific hybrids have been reported in all kingdoms of life. However, many questions on the ecological circumstances and evolutionary aftermath of interspecific hybridisation remain unanswered. In this study, we sequenced and phenotyped a large set of interspecific yeast hybrids isolated from the brewing environments to uncover the influence of interspecific hybridisation in yeast adaptation and domestication. Our analyses demonstrate that several hybrids between Saccharomyces species originated and diversified in industrial environments by combining key traits of each parental species. Furthermore, post-hybridisation evolution within each hybrid lineage reflects sub-specialisation and adaptation to specific beer styles, a process that was accompanied by extensive chimerisation between subgenomes. Our results reveal how interspecific hybridisation provides an important evolutionary route that allows swift adaptation to novel environments.
BackgroundLong non-coding RNAs (lncRNAs) have emerged as new class of regulatory molecules in animals where they regulate gene expression at transcriptional and post-transcriptional level. Recent studies also identified lncRNAs in plant genomes, revealing a new level of transcriptional complexity in plants. Thousands of lncRNAs have been predicted in the Arabidopsis thaliana genome, but only a few have been studied in depth.ResultsHere we report the identification of Arabidopsis lncRNAs that are expressed during the vegetative stage of development in either the shoot apical meristem or in leaves. We found that hundreds of lncRNAs are expressed in these tissues, of which 50 show differential expression upon an increase in ambient temperature. One of these lncRNAs, FLINC, is down-regulated at higher ambient temperature and affects ambient temperature-mediated flowering in Arabidopsis.ConclusionA number of ambient temperature responsive lncRNAs were identified with potential roles in the regulation of temperature-dependent developmental changes, such as the transition from the vegetative to the reproductive (flowering) phase. The challenge for the future is to characterize the biological function and molecular mode of action of the large number of ambient temperature-regulated lncRNAs that have been identified in this study.Electronic supplementary materialThe online version of this article (10.1186/s12870-018-1362-x) contains supplementary material, which is available to authorized users.
Geophytes, the plants that form vegetative storage organs, are characterized by a dual reproduction system, in which vegetative and sexual propagation are tightly regulated to ensure fitness in harsh climatic conditions. Recent findings highlight the role of the PEBP (PHOSPHATIDYLETHANOLAMINE-BINDING PROTEINS) gene family in geophytes as major players in the molecular cascades underlying both types of reproduction. In this review, we briefly explain the life cycle and reproduction strategies of different geophytes and what is known about the physiological aspects related to these processes. Subsequently, an in-depth overview is provided of the molecular and genetic pathways driving these processes. In the evolution of plants, the PEBP gene family has expanded followed by neo- and sub-functionalization. Careful characterization revealed that differential expression and differential protein complex formation provides the members of this gene family with unique functions, enabling to mediate the crosstalk between the two reproductive events in geophytes in response to environmental and endogenous cues. Taken all these studies into account, we propose to regard the PEBPs as conductors of geophytes reproductive development.
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