Trees sustain livelihoods and mitigate climate change but a predominance of trees outside forests and limited resources make it difficult for many tropical countries to conduct automated nation-wide inventories. Here, we propose an approach to map the carbon stock of each individual overstory tree at the national scale of Rwanda using aerial imagery from 2008 and deep learning. We show that 72% of the mapped trees are located in farmlands and savannas and 17% in plantations, accounting for 48.6% of the national aboveground carbon stocks. Natural forests cover 11% of the total tree count and 51.4% of the national carbon stocks, with an overall carbon stock uncertainty of 16.9%. The mapping of all trees allows partitioning to any landscapes classification and is urgently needed for effective planning and monitoring of restoration activities as well as for optimization of carbon sequestration, biodiversity and economic benefits of trees.

The consistent monitoring of trees both inside and outside of forests is key to mitigating climate change. Current monitoring systems either ignore trees outside forests or are too expensive to be applied consistently across countries on a repeated basis. Here we make use of the PlanetScope nanosatellite constellation, which delivers global very high-resolution daily imagery, to map both forest and non-forest tree cover for continental Africa using images from a single year. Our prototype map of 2019 demonstrates that a precise assessment of all tree-based systems is possible at continental scale, and reveals that 29% of tree cover is found outside areas previously classified as tree cover, such as in croplands and grassland. Such accurate mapping of tree cover at metric resolution down to the level of individual trees and consistent among countries has the potential to redefine land use impacts, move beyond the need for forest definitions, build the basis for natural climate solutions, and provide a new scientific basis for tree related studies.

The distribution of dryland trees and their density, cover, size, mass and carbon content are not well known at sub-continental to continental scales1–14. This information is important for ecological protection, carbon accounting, climate mitigation and restoration efforts of dryland ecosystems15–18. We assessed more than 9.9 billion trees derived from more than 300,000 satellite images, covering semi-arid sub-Saharan Africa north of the Equator. We attributed wood, foliage and root carbon to every tree in the 0–1,000 mm year−1 rainfall zone by coupling field data19, machine learning20–22, satellite data and high-performance computing. Average carbon stocks of individual trees ranged from 0.54 Mg C ha−1 and 63 kg C tree−1 in the arid zone to 3.7 Mg C ha−1 and 98 kg tree−1 in the sub-humid zone. Overall, we estimated the total carbon for our study area to be 0.84 (±19.8%) Pg C. Comparisons with 14 previous TRENDY numerical simulation studies23 for our area found that the density and carbon stocks of scattered trees have been underestimated by three models and overestimated by 11 models, respectively. This benchmarking can help understand the carbon cycle and address concerns about land degradation24–29. We make available a linked database of wood mass, foliage mass, root mass and carbon stock of each tree for scientists, policymakers, dryland-restoration practitioners and farmers, who can use it to estimate farmland tree carbon stocks from tablets or laptops.

The consistent monitoring of trees both inside and outside of forests is key to sustainable land management. Current monitoring systems either ignore trees outside forests or are too expensive to be applied consistently across countries on a repeated basis. Here we use the PlanetScope nanosatellite constellation, which delivers global very high-resolution daily imagery, to map both forest and non-forest tree cover for continental Africa using images from a single year. Our prototype map of 2019 (RMSE = 9.57%, bias = −6.9%). demonstrates that a precise assessment of all tree-based ecosystems is possible at continental scale, and reveals that 29% of tree cover is found outside areas previously classified as tree cover in state-of-the-art maps, such as in croplands and grassland. Such accurate mapping of tree cover down to the level of individual trees and consistent among countries has the potential to redefine land use impacts in non-forest landscapes, move beyond the need for forest definitions, and build the basis for natural climate solutions and tree-related studies.

Trees sustain livelihoods and mitigate climate change, but a predominance of trees outside forests and limited resources make it difficult for many developing countries to conduct frequent nation-wide inventories. Here, we propose a rapid and accurate approach to map the carbon stock of each individual tree and shrub at the national scale of Rwanda using aerial imagery and deep learning. We show that 72% of the mapped trees are located in farmlands and savannas, and 15% in plantations. These non-forest trees account for 41% of the national carbon stocks. Natural forests cover 5% of the country and 11% of the total tree count, but comprise 59% of the national carbon stocks. The mapping of all trees facilitates any landscape stratification and is urgently needed for effective planning and monitoring of landscape restoration activities as well as for optimization of carbon sequestration, biodiversity and economic benefits of trees.