The unimolecular chemiluminescent decomposition of unsubstituted dioxetanone was studied at the complete active space self-consistent field level of theory combined with the multistate second-order multiconfigurational perturbation theory energy correction. The calculations revealed interesting features. Two transition states, two conical intersections, and one intermediate stable biradical structure along the lowest energy reaction path were identified. It was noted that the conical intersections are found at or in very close proximity to the transition states. The first and second transition states correspond to O-O and C-C cleavages, respectively. In particular, a planar structure is supported by the (1)(sigma,sigma*) state during the O-O dissociation up to the first transition state and conical intersection. At this point the (1)(sigma,sigma*) state dissociation path bifurcates, corresponding to a torsion of the O-C-C-O angle. Simultaneously, the (1)(n,sigma*) state becomes lower in energy while still favoring a planar structure. As the lowest-energy reaction path proceeds toward the second transition state and conical intersection, the (1)(n,sigma*), (3)(n,sigma*), and (1)(sigma,sigma*) states are close in energy. This work suggests that the vibrational distribution at the first conical intersection and the interactions among the states as the reaction proceeds between the two transition states are the origin of the population of the chemiluminescent (n,sigma*) states.
Let it shine: New hypoxia-sensitive fluorescent probes were developed; they consist of a rhodamine moiety with an azo group directly conjugated to the fluorophore. Because of an ultrafast conformational change around the NN bond, the compounds are nonfluorescent under normoxia. However, under hypoxia, the azo group is reduced, and a strongly fluorescent rhodamine derivative is released.
CASSCF and CASPT2 studies on the reaction mechanism of the photochromic ring-opening process of a spiropyran (SP) (1',3',3'-trimethylspiro-[2H-1-benzopyran-2,2'-indoline], also known as BIPS) have been performed and possible excited-state C-O (and C-N) bond cleavage pathways and S1-to-S0 nonadiabatic transition channels have been explored. (1) The C-O bond dissociation in SP does not follow a conical-intersection mechanism that has been proposed in a model study with a simplified benzopyran. The CASSCF-optimized crossing points are actually avoided crossings with a large S1-S0 energy gap at the CASPT2 level; thus, they could not act as efficient S1-to-S0 funnels. (2) C-O bond cleavage paths on S1 leading to both the CCC (cis-cis-cis with respect to the configuration around α, β, γ) and TCC (trans-cis-cis) intermediates of merocyanine (MC) are barrierless, in line with the experimentally observed ultrafast formation of MC. (3) An unexpected low-energy hydrogen-out-of-plane (HOOP) valley on the (π→σ*) surface was located not far from the C-O bond cleavage path and was suggested to be an efficient S1-to-S0 nonadiabatic decay channel. Triggered by the active HOOP mode, the molecule can easily access the S1-HOOP valley and then make a transition to the S0 surface through the narrow S1-S0 gap that exists in an extended region. Nonadiabatic decay through a conical intersection on C-N dissociation path as well as the HOOP funnel is responsible for high internal conversion yields of SP. These findings shedding light on the complex mechanism of SP-MC interconversion provide fundamental information for design spiropyran-based photochromic devices.
-N-Acetyl-D-hexosaminidase has been postulated to have a specialized function. However, the structural basis of this specialization is not yet established. OfHex1, the enzyme from the Asian corn borer Ostrinia furnacalis (one of the most destructive pests) has previously been reported to function merely in chitin degradation. Here the vital role of OfHex1 during the pupation of O. furnacalis was revealed by RNA interference, and the crystal structures of OfHex1 and OfHex1 complexed with TMG-chitotriomycin were determined at 2.1 Å . The mechanism of selective inhibition by TMG-chitotriomycin was related to the existence of the ؉1 subsite at the active pocket of OfHex1 and a key residue, Trp 490 , at this site. Mutation of Trp 490 to Ala led to a 2,277-fold decrease in sensitivity toward TMG-chitotriomycin as well as an 18-fold decrease in binding affinity for the substrate (GlcNAc) 2 . Although the overall topology of the catalytic domain of OfHex1 shows a high similarity with the human and bacterial enzymes, OfHex1 is distinguished from these enzymes by large conformational changes linked to an "open-close" mechanism at the entrance of the active site, which is characterized by the "lid" residue, Trp 448 . Mutation of Trp 448 to Ala or Phe resulted in a more than 1,000-fold loss in enzyme activity, due mainly to the effect on k cat . The current work has increased our understanding of the structure-function relationship of OfHex1, shedding light on the structural basis that accounts for the specialized function of -N-acetyl-D-hexosaminidase as well as making the development of species-specific pesticides a likely reality.-N-Acetyl-D-hexosaminidase (EC 3.2.1.52), a member of the family 20 glycosyl hydrolyases (GH20), 4 is an enzyme that participates in the breakdown of glycosidic bonds of glycans, glycoproteins, and glycolipids (1). It has been postulated to have specialized physiological functions, including post-translational modification of N-glycans, degradation of glycoconjugates, and egg-sperm recognition (1). The structural basis for these specialized functions is still unclear.It is interesting to note that insects have evolved to have more than one -N-acetyl-D-hexosaminidase, as revealed by genomic analysis of various insects, including Coleoptera, Diptera, Hymenoptera, Lepidoptera, Phthiraptera, and Hemiptera. The activities of insect -N-acetyl-D-hexosaminidases are not restricted to chitin degradation but are also associated with post-translational modification of N-glycans, degradation of glycoconjugates, and egg-sperm recognition, suggesting that these enzymes have rather versatile physiological functions in the growth and development of insects (2). Some of these physiological functions may overlap with those of the same enzymes found in higher organisms. Mammal lysosomal -N-acetyl-D-hexosaminidases are mainly responsible for glycoconjugate degradation in lysosome (3). Likewise, -N-acetyl-D-hexosaminidases from the insects Bombyx mori (4) and Spodoptera frugiperda (5) have broad substrate spe...
A highly effective C−O coupling reaction of (hetero)aryl electrophiles with primary and secondary alcohols is reported. Catalyzed by a NiII‐aryl complex under long‐wave UV (390–395 nm) irradiation in the presence of a soluble amine base without any additional photosensitizer, the reaction enables the etherification of aryl bromides and aryl chlorides as well as sulfonates with a wide range of primary and secondary aliphatic alcohols, affording synthetically important ethers. Intramolecular C−O coupling is also possible. The reaction appears to proceed via a NiI–NiIII catalytic cycle.
The crystal structure of a ternary Er(DBM)3phen complex (DBM = dibenzoylmethane; phen = 1,10‐phenanthroline) and its in‐situ synthesis via a sol–gel process are reported. The infrared (IR), diffuse reflectance (DR), and fluorescence spectra of the pure complex and the Er3+/DBM/phen co‐doped luminescent hybrid gel, formed via an in‐situ method (ErDP gel), have been investigated. The results reveal that the erbium complex is successfully synthesized in situ in the ErDP gel. Excitation at the maximum absorption wavelength of the ligands resulted in the typical near‐IR luminescence (centered at around 1.54 μm) resulting from the 4I13/2 → 4I15/2 transition of the Er3+ ion, which contributes to the efficient energy transfer from the ligands to the Er3+ ion in both the Er(DBM)3phen complex and the ErDP gel (an antenna effect). The full width at half maximum (FWHM) centered at 1541 nm in the emission spectrum of the ErDP gel is 72 nm, which has potential for optical‐amplification applications. Further theoretical analysis on the Er3+ ion in the ErDP gel shows that it appears to be a promising candidate for tunable lasers and planar optical amplifiers.
The photochromic ring-opening reaction of spiropyran has been revisited at the multireference CASSCF and CASPT2 level with a CAS(22e,20o) active space, in combination with density matrix renormalization group (DMRG) methods. The accuracy of the DMRG-CASSCF and DMRG-CASPT2 calculations, with respect to the number of renormalized states, the number of roots in state-averaged wave functions, and the number basis functions, was examined. For the current system, chemically accurate results can be obtained with a relatively small number of renormalized states. The nature and vertical excitation energies of the excited (S1 and S2) states are consistent with conventional CAS(or RAS)PT2 with medium active spaces. The capability of the DMRG-CASSCF method in the optimization of molecular geometry is demonstrated for the first time. The computation costs (several hours per optimization cycle) are comparable with that of the conventional CASSCF geometry optimization with small active space. Finally, the DMRG-PT2 computed S1-MEP for the C-O and C-N bond-cleavage processes show good agreement with our previous calculations with a CAS(12e,10o) active space [Liu, F.; Morokuma, K. J. Am. Chem. Soc. 2013, 135, 10693-10702]. Especially, the role of the HOOP valleys in the S1 → S0 nonadiabatic decay has been confirmed.
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