Sweetpotato, with a global annual planting area of approximately 9 million ha, is the second most important tropical root crop. It is widely adapted, being grown in more than 110 countries. Early maturing varieties grow in 3-4 months. It is hardy and has multiple uses. Both roots and foliage are edible and provide energy and nutrients in diets. Distinct quality types have different uses, with orange-fleshed sweetpotato being valued for its extremely high provitamin A content, and other types used in varied fresh and processed forms. Sweetpotato is easily bred, as true seed is easily obtained and generation cycles are short. There are five objectives of this review. The first objective is to briefly describe recent production and utilization trends by region; the second is to review knowledge about the origin and genetic nature of sweetpotato; the third is to review selected breeding objectives. The fourth objective is to review advances in understanding of breeding methods, including: (i) generation of seed through polycross nurseries and controlled cross breeding; (ii) a description of a new accelerated breeding approach; (iii) recent efforts to systematically exploit heterosis; and (iv) new approaches of genomic selection. The fifth objective is to provide information about variety releases during the past 20 years in West, East and Southern Africa, South Asia, East and South-east Asia, China and the Pacific.

In developing countries, the sweetpotato, Ipomoea batatas (L.) Lam. (2n=6x=90), is an important autopolyploid species, both socially and economically. However, quantitative trait loci (QTL) mapping has remained limited due to its genetic complexity. Current fixed-effect models can fit only a single QTL and are generally hard to interpret. Here, we report the use of a random-effect model approach to map multiple QTL based on score statistics in a sweetpotato biparental population (‘Beauregard’ × ‘Tanzania’) with 315 full-sibs. Phenotypic data were collected for eight yield component traits in six environments in Peru, and jointly adjusted means were obtained using mixed-effect models. An integrated linkage map consisting of 30,684 markers distributed along 15 linkage groups (LGs) was used to obtain the genotype conditional probabilities of putative QTL at every centiMorgan position. Multiple interval mapping was performed using our R package QTLpoly and detected a total of 13 QTL, ranging from none to four QTL per trait, which explained up to 55% of the total variance. Some regions, such as those on LGs 3 and 15, were consistently detected among root number and yield traits, and provided a basis for candidate gene search. In addition, some QTL were found to affect commercial and noncommercial root traits distinctly. Further best linear unbiased predictions were decomposed into additive allele effects and were used to compute multiple QTL-based breeding values for selection. Together with quantitative genotyping and its appropriate usage in linkage analyses, this QTL mapping methodology will facilitate the use of genomic tools in sweetpotato breeding as well as in other autopolyploids.

Key message β-Carotene content in sweetpotato is associated with the Orange and phytoene synthase genes; due to physical linkage of phytoene synthase with sucrose synthase, β-carotene and starch content are negatively correlated. Abstract In populations depending on sweetpotato for food security, starch is an important source of calories, while β-carotene is an important source of provitamin A. The negative association between the two traits contributes to the low nutritional quality of sweetpotato consumed, especially in sub-Saharan Africa. Using a biparental mapping population of 315 F 1 progeny generated from a cross between an orange-fleshed and a non-orange-fleshed sweetpotato variety, we identified two major quantitative trait loci (QTL) on linkage group (LG) three (LG3) and twelve (LG12) affecting starch, β-carotene, and their correlated traits, dry matter and flesh color. Analysis of parental haplotypes indicated that these two regions acted pleiotropically to reduce starch content and increase β-carotene in genotypes carrying the orange-fleshed parental haplotype at the LG3 locus. Phytoene synthase and sucrose synthase, the rate-limiting and linked genes located within the QTL on LG3 involved in the carotenoid and starch biosynthesis, respectively, were differentially expressed in Beauregard versus Tanzania storage roots. The Orange gene, the molecular switch for chromoplast biogenesis, located within the QTL on LG12 while not differentially expressed was expressed in developing roots of the parental genotypes. We conclude that these two QTL regions act together in a cis and trans manner to inhibit starch biosynthesis in amyloplasts and enhance chromoplast biogenesis, carotenoid biosynthesis, and accumulation in orange-fleshed sweetpotato. Understanding the genetic basis of this negative association between starch and β-carotene will inform future sweetpotato breeding strategies targeting sweetpotato for food and nutritional security.

Sweetpotato [Ipomoea batatas (L.) Lam] farmer varieties are still the backbone of production and breeding programs in Sub-Sahara Africa. Usually, farmer varieties in Sub-Sahara Africa are white-or cream-fleshed sweetpotato (WFSP), but recently orange-fleshed sweetpotato (OFSP) were found in East Africa. The objective of the study was to characterize WFSP and OFSP germplasm from East Africa. Eighty-five East African farmer varieties (29 OFSPs and 56 WFSPs) and seven varieties of non-African origin as check clones were analyzed for diversity using 26 simple sequence repeat (SSR) markers. A total of 158 alíeles were scored with an average of 6.1 alíeles per SSR loci. The mean of Jaccard's similarity coefficients was 0.54. The unweighted pair group method analysis (UPGMA) revealed a main cluster for East Africa germplasm at a similarity coefficient of 0.52. At a similarity coefficient of about 0.55 subclusters within the East African germplasm were observed, but these were neither country nor flesh color specific. Analysis of molecular variance (AMOVA) found a significant difference between East African and non-African germplasm and a nonsignificant difference between OFSP and WFSP germplasm. In conclusion, the East African germplasm appears to be distinct from non-African germplasm, and OFSP and WFSP farmer varieties from East Africa are closely related. Orange-fleshed sweetpotato farmer varieties from East Africa might show similar adaptation to Sub-Sahara African environments as WFSP and a big potential in alleviating vitamin A deficiency.

Sweetpotato [Ipomoea batatas (L.) Lam] breeding is important for food security and health in East Africa (EA), and a breeding platform in Uganda provides national researchers and breeders in EA with true seed. Our objectives were to characterize genetic relationships among parental material used at the EA breeding platform. There were 135 parents and six check clones analyzed using 31 simple sequence repeat primers. An average of 7.13 alleles per primer was found, and Jaccard similarity coefficients were in the range of 0.298 to 1.00 with a mean of 0.542. Unweighted pair group cluster analysis placed most African parents in two main subclusters showing no association with morphology or geographical origin. The subclusters were also supported by principal coordinate analysis, derivative analysis of principal components, and population structure simulations. The analyzed breeding material from EA was highly genetically variable, grouped in two distinct genetic pools, and suitable to study heterosis exploiting breeding schemes.

ABSTRACTIn developing countries, the sweetpotato,Ipomoea batatas(L.) Lam. (2n= 6x= 90), is an important autopolyploid species, both socially and economically. However, quantitative trait loci (QTL) mapping has remained limited due to its genetic complexity. Current fixed-effect models can only fit a single QTL and are generally hard to interpret. Here we report the use of a random-effect model approach to map multiple QTL based on score statistics in a sweetpotato bi-parental population (‘Beauregard’בTanzania’) with 315 full-sibs. Phenotypic data were collected for eight yield component traits in six environments in Peru, and jointly predicted means were obtained using mixed-effect models. An integrated linkage map consisting of 30,684 markers distributed along 15 linkage groups (LGs) was used to obtain the genotype conditional probabilities of putative QTL at every cM position. Multiple interval mapping was performed using our R package QTLPOLY and detected a total of 41 QTL, ranging from one to ten QTL per trait. Some regions, such as those on LGs 3 and 15, were consistently detected among root number and yield traits and provided basis for candidate gene search. In addition, some QTL were found to affect commercial and noncommercial root traits distinctly. Further best linear unbiased predictions allowed us to characterize additive allele effects as well as to compute QTL-based breeding values for selection. Together with quantitative genotyping and its appropriate usage in linkage analyses, this QTL mapping methodology will facilitate the use of genomic tools in sweetpotato breeding as well as in other autopolyploids.

Sweetpotato is a highly heterozygous hybrid, and populations of orange-fleshed sweetpotato (OFSP) have a considerable importance for food security and health. The objectives were to estimate heterosis increments and response to selection in three OFSP hybrid populations (H1) developed in Peru for different product profiles after one reciprocal recurrent selection cycle, namely, H1 for wide adaptation and earliness (O-WAE), H1 for no sweetness after cooking (O-NSSP), and H1 for high iron (O-HIFE). The H1 populations were evaluated at two contrasting locations together with parents, foundation (parents in H0), and two widely adapted checks. Additionally, O-WAE was tested under two environmental conditions of 90-day and a normal 120-day harvest. In each H1, the yield and selected quality traits were recorded. The data were analyzed using linear mixed models. The storage root yield traits exhibited population average heterosis increments of up to 43.5%. The quality traits examined have exhibited no heterosis increments that are worth exploiting. The storage root yield genetic gain relative to the foundation was remarkable: 118.8% for H1-O-WAE for early harvest time, 81.5% for H1-O-WAE for normal harvest time, 132.4% for H1-O-NSSP, and 97.1% for H1-O-HIFE. Population hybrid breeding is a tool to achieve large genetic gains in sweetpotato yield via more efficient population improvement and allows a rapid dissemination of globally true seed that is generated from reproducible elite crosses, thus, avoiding costly and time-consuming virus cleaning of elite clones typically transferred as vegetative plantlets. The population hybrid breeding approach is probably applicable to other clonally propagated crops, where potential for true seed production exists.

Orange‐fleshed sweetpotato [Ipomoea batatas (L.) Lam.] (OFSP) breeding populations have gained importance for food security and health reasons. This study's main objectives were to determine genetic diversity in parental material of two OFSP populations developed in Peru (Jewel [PJ] and Zapallo [PZ]) relative to mega‐clones (MCs) using agronomic traits and simple sequence repeat (SSR) markers and to determine whether PJ and PZ are mutually heterotic by developing a PJ × PZ hybrid population (H0). Field trials were performed with clones for PJ (n = 49), PZ (n = 31), MC (n = 21), and H0 (n = 6,898) in Peru. Traits recorded were storage root yield (RYTHA), number of commercial roots per plant, foliage yield, biomass, harvest index, and dry matter (RDM), β‐carotene (RBC), protein, starch, sucrose, iron, zinc, and calcium content of storage roots. Sixty‐six pairs of SSR primers were used to determine molecular diversity. Statistics used were linear mixed models, principal component analysis, and standard procedures for molecular data. New genetic variation was found in PJ and PZ (e.g., RDM ≥29% with RBC ≥25 mg 100 g−1 dry weight basis). For most traits, genetic variance in PJ and PZ was as large as in MC. The SSR marker data clearly separated PJ and PZ into two gene‐pools, together covering nearly the entire MC molecular diversity. Average RYTHA in H0 was high (40.7 t ha−1) with average heterosis increment of 21.8% and range −30.6 to 139.4%. The PJ and PZ lend themselves to study of the efficiency of reciprocal recurrent selection in sweetpotato population hybrid breeding.