Abstract. Hydrologic conditions are a key factor in Arctic ecosystems, with strong influences on ecosystem structure and related effects on biogeophysical and biogeochemical processes. With systematic changes in water availability expected for large parts of the northern high-latitude region in the coming centuries, knowledge on shifts in ecosystem functionality triggered by altered water levels is crucial for reducing uncertainties in climate change predictions. Here, we present findings from paired ecosystem observations in northeast Siberia comprising a drained and a control site. At the drainage site, the water table has been artificially lowered by up to 30 cm in summer for more than a decade. This sustained primary disturbance in hydrologic conditions has triggered a suite of secondary shifts in ecosystem properties, including vegetation community structure, snow cover dynamics, and radiation budget, all of which influence the net effects of drainage. Reduced thermal conductivity in dry organic soils was identified as the dominating drainage effect on energy budget and soil thermal regime. Through this effect, reduced heat transfer into deeper soil layers leads to shallower thaw depths, initially leading to a stabilization of organic permafrost soils, while the long-term effects on permafrost temperature trends still need to be assessed. At the same time, more energy is transferred back into the atmosphere as sensible heat in the drained area, which may trigger a warming of the lower atmospheric surface layer.

Permafrost landscapes in northern high latitudes with their massive organic carbon stocks are an important, poorly known, component of the global carbon cycle. However, in light of future Arctic warming, the sustainability of these carbon pools is uncertain. To a large part, this is due to a limited understanding of the carbon cycle processes because of sparse observations in Arctic permafrost ecosystems. Here we present an eddy covariance data set covering more than 3 years of continuous CO2 and CH4 flux observations within a moist tussock tundra ecosystem near Chersky in north‐eastern Siberia. Through parallel observations of a disturbed (drained) area and a control area nearby, we aim to evaluate the long‐term effects of a persistently lowered water table on the net vertical carbon exchange budgets and the dominating biogeochemical mechanisms. Persistently drier soils trigger systematic shifts in the tundra ecosystem carbon cycle patterns. Both, uptake rates of CO2 and emissions of CH4 decreased. Year‐round measurements emphasize the importance of the non‐growing season—in particular the “zero‐curtain” period in the fall—to the annual budget. Approximately 60% of the CO2 uptake in the growing season is lost during the cold seasons, while CH4 emissions during the non‐growing season account for 30% of the annual budget. Year‐to‐year variability in temperature conditions during the late growing season was identified as the primary control of the interannual variability observed in the CO2 and CH4 fluxes.

Abstract. Hydrologic conditions are a major controlling factor for carbon exchange processes in high-latitude ecosystems. The presence or absence of water-logged conditions can lead to significant shifts in ecosystem structure and carbon cycle processes. In this study, we compared growing season CO 2 fluxes of a wet tussock tundra ecosystem from an area affected by decadal drainage to an undisturbed area on the Kolyma floodplain in northeastern Siberia. For this comparison we found the sink strength for CO 2 in recent years (2013)(2014)(2015) to be systematically reduced within the drained area, with a minor increase in photosynthetic uptake due to a higher abundance of shrubs outweighed by a more pronounced increase in respiration due to warmer near-surface soil layers. Still, in comparison to the strong reduction of fluxes immediately following the drainage disturbance in 2005, recent CO 2 exchange with the atmosphere over this disturbed part of the tundra indicate a higher carbon turnover, and a seasonal amplitude that is comparable again to that within the control section. This indicates that the local permafrost ecosystem is capable of adapting to significantly different hydrologic conditions without losing its capacity to act as a net sink for CO 2 over the growing season. The comparison of undisturbed CO 2 flux rates from 2013-2015 to the period of [2002][2003][2004] indicates that CO 2 exchange with the atmosphere was intensified, with increased component fluxes (ecosystem respiration and gross primary production) over the past decade. Net changes in CO 2 fluxes are dominated by a major increase in photosynthetic uptake, resulting in a stronger CO 2 sink in 2013-2015. Application of a MODISbased classification scheme to separate the growing season into four sub-seasons improved the interpretation of interannual variability by illustrating the systematic shifts in CO 2 uptake patterns that have occurred in this ecosystem over the past 10 years and highlighting the important role of the late growing season for net CO 2 flux budgets.

The sustainability of the vast Arctic permafrost carbon pool under climate change is of paramount importance for global climate trajectories. Accurate climate change forecasts, therefore, depend on a reliable representation of mechanisms governing Arctic carbon cycle processes, but this task is complicated by the complex interaction of multiple controls on Arctic ecosystem changes, linked through both positive and negative feedbacks. As a primary example, predicted Arctic warming can be substantially influenced by shifts in hydrologic regimes, linked to, for example, altered precipitation patterns or changes in topography following permafrost degradation. This study presents observational evidence how severe drainage, a scenario that may affect large Arctic areas with ice‐rich permafrost soils under future climate change, affects biogeochemical and biogeophysical processes within an Arctic floodplain. Our in situ data demonstrate reduced carbon losses and transfer of sensible heat to the atmosphere, and effects linked to drainage‐induced long‐term shifts in vegetation communities and soil thermal regimes largely counterbalanced the immediate drainage impact. Moreover, higher surface albedo in combination with low thermal conductivity cooled the permafrost soils. Accordingly, long‐term drainage effects linked to warming‐induced permafrost degradation hold the potential to alleviate positive feedbacks between permafrost carbon and Arctic warming, and to slow down permafrost degradation. Self‐stabilizing effects associated with ecosystem disturbance such as these drainage impacts are a key factor for predicting future feedbacks between Arctic permafrost and climate change, and, thus, neglect of these mechanisms will exaggerate the impacts of Arctic change on future global climate projections.

This study aimed at quantifying potential negative effects of instrument heating to improve eddy‐covariance flux data quality in cold environments. Our overarching objective was to minimize heating‐related bias in annual CO2 budgets from an Arctic permafrost system. We used continuous eddy‐covariance measurements covering three full years within an Arctic permafrost ecosystem with parallel sonic anemometers operation with activated heating and without heating as well as parallel operation of open‐ and closed‐path gas analyzers, the latter serving as a reference. Our results demonstrate that the sonic anemometer heating has a direct effect on temperature measurements while the turbulent wind field is not affected. As a consequence, fluxes of sensible heat are increased by an average 5 W m−2 with activated heating, while no direct effect on other scalar fluxes was observed. However, the biased measurements in sensible heat fluxes can have an indirect effect on the CO2 fluxes in case they are used as input for a density‐flux WPL correction of an open‐path gas analyzer. Evaluating the self‐heating effect of the open‐path gas analyzer by comparing CO2 flux measurements between open‐ and closed‐path gas analyzers, we found systematically higher CO2 uptake recorded with the open‐path sensor, leading to a cumulative annual offset of 96 gC m−2, which was not only the result of the cold winter season but also due to substantial self‐heating effects during summer. With an inclined sensor mounting, only a fraction of the self‐heating correction for vertically mounted instruments is required.

Abstract. Methane (CH4) emissions from biogenic sources, such as Arctic permafrost wetlands, are associated with large uncertainties because of the high variability of fluxes in both space and time. This variability poses a challenge to monitoring CH4 fluxes with the eddy covariance (EC) technique, because this approach requires stationary signals from spatially homogeneous sources. Episodic outbursts of CH4 emissions, i.e. triggered by spontaneous outgassing of bubbles or venting of methane-rich air from lower levels due to shifts in atmospheric conditions, are particularly challenging to quantify. Such events typically last for only a few minutes, which is much shorter than the common averaging interval for EC (30 min). The steady-state assumption is jeopardised, which potentially leads to a non-negligible bias in the CH4 flux. Based on data from Chersky, NE Siberia, we tested and evaluated a flux calculation method based on wavelet analysis, which, in contrast to regular EC data processing, does not require steady-state conditions and is allowed to obtain fluxes over averaging periods as short as 1 min. Statistics on meteorological conditions before, during, and after the detected events revealed that it is atmospheric mixing that triggered such events rather than CH4 emission from the soil. By investigating individual events in more detail, we identified a potential influence of various mesoscale processes like gravity waves, low-level jets, weather fronts passing the site, and cold-air advection from a nearby mountain ridge as the dominating processes. The occurrence of extreme CH4 flux events over the summer season followed a seasonal course with a maximum in early August, which is strongly correlated with the maximum soil temperature. Overall, our findings demonstrate that wavelet analysis is a powerful method for resolving highly variable flux events on the order of minutes, and can therefore support the evaluation of EC flux data quality under non-steady-state conditions.

Abstract. Methane flux measurements by the eddy-covariance technique are subject to large uncertainties, particularly linked to the partly highly intermittent nature of methane emissions. Outbursts of high methane emissions, termed event fluxes, hold the potential to introduce systematic biases into derived methane budgets, since under such conditions the assumption of stationarity of the flow is violated. In this study, we investigate the net impact of this effect by comparing eddy-covariance fluxes against a wavelet-derived reference that is not negatively influenced by non-stationarity. Our results demonstrate that methane emission events influenced 3 %–4 % of the flux measurements and did not lead to systematic biases in methane budgets for the analyzed summer season; however, the presence of events substantially increased uncertainties in short-term flux rates. The wavelet results provided an excellent reference to evaluate the performance of three different gap-filling approaches for eddy-covariance methane fluxes, and we show that none of them could reproduce the range of observed flux rates. The integrated performance of the gap-filling methods for the longer-term dataset varied between the two eddy-covariance towers involved in this study, and we show that gap-filling remains a large source of uncertainty linked to limited insights into the mechanisms governing the short-term variability in methane emissions. With the capability for broadening our observational methane flux database to a wider range of conditions, including the direct resolution of short-term variability on the order of minutes, wavelet-derived fluxes hold the potential to generate new insight into methane exchange processes with the atmosphere and therefore also improve our understanding of the underlying processes.

<p><strong>Abstract.</strong> Methane (CH<sub>4</sub>) emissions from biogenic sources, such as Arctic permafrost wetlands, are associated with large uncertainties because of the high variability of fluxes in both space and time. This variability poses a challenge to monitoring CH<sub>4</sub> fluxes with the eddy covariance (EC) technique, because this approach requires stationary signals from spatially homogeneous sources. Episodic outbursts of CH<sub>4</sub> emissions, i.e. outgassing in the form of bubbles from oversaturated groundwater or surfacewater, are particularly challenging to quantify. Such events typically last for only a few minutes, which is much shorter than the common averaging interval for EC (30 minutes). The steady state assumption is jeopardized, which potentially leads to a non-negligible bias in the CH<sub>4</sub> flux. We tested and evaluated a flux calculation method based on wavelet analysis, which, in contrast to regular EC data processing, does not require steady-state conditions and is allowed to obtain fluxes over averaging periods as short as 1 minute. We demonstrate that the occurrence of extreme CH<sub>4</sub> flux events over the summer season followed a seasonal course with a maximum in early August, which is strongly correlated with the maximum soil temperature. Statistics on meteorological conditions before, during, and after the detected events revealed that it is atmospheric mixing that triggered such events rather than CH<sub>4</sub> emission from the soil. By investigating individual events in more detail, we identified various mesoscale processes like gravity waves, low-level jets, weather fronts passing the site, and cold-air advection from a nearby mountain ridge as the dominating processes. Overall, our findings demonstrate that wavelet analysis is a powerful method for resolving highly variable flux events on the order of minutes. It is a reliable reference to evaluate the quality of EC fluxes under non-steady-state conditions.</p>