Question: How many vegetation plot observations (relevés) are available in electronic databases, how are they geographically distributed, what are their properties and how might they be discovered and located for research and application?Location: Global. Methods:We compiled the Global Index of Vegetation-Plot Databases (GIVD; http://www.givd.info), an Internet resource aimed at registering metadata on existing vegetation databases. For inclusion, databases need to (i) contain temporally and spatially explicit species co-occurrence data and (ii) be accessible to the scientific public. This paper summarizes structure and data quality of databases registered in GIVD as of 30 December 2010.Results: On the given date, 132 databases containing more than 2.4 million non-overlapping plots had been registered in GIVD. The majority of these data were in European databases (83 databases, 1.6 million plots), whereas other continents were represented by substantially less (North America 15, Asia 13, Africa nine, South America seven, Australasia two, multi-continental three). The oldest plot observation was 1864, but most plots were recorded after 1970. Most plots reported vegetation on areas of 1 to 1000 m 2 ; some also stored timeseries and nested-plot data. Apart from geographic reference (required for inclusion), most frequent information was on altitude (71%), slope aspect and inclination (58%) and land use (38%), but rarely soil properties ( o 7%). Conclusions:The vegetation plot data in GIVD constitute a major resource for biodiversity research, both through the large number of species occurrence records and storage of species co-occurrence information at a small scale, combined with structural and plot-based environmental data. We identify shortcomings in available data that need to be addressed through sampling under-represented geographic regions, providing better incentives for data collection and sharing, developing user-friendly database exchange standards, as well as tools to analyse and remove confounding effects of sampling biases. The increased availability of data sets conferred by registration in GIVD offers significant opportunities for largescale studies in community ecology, macroecology and global change research.Dengler, J.
Fauna Europaea is Europe's main zoological taxonomic index, making the scientific names and distributions of all living, currently known, multicellular, European land and freshwater animals species integrally available in one authoritative database. Fauna Europaea covers about 260,000 taxon names, including 145,000 accepted (sub)species, assembled by a large network of (>400) leading specialists, using advanced electronic tools for data collations with data quality assured through sophisticated validation routines. Fauna Europaea started in 2000 as an EC funded FP5 project and provides a unique taxonomic reference for many user-groups such as scientists, governments, industries, nature conservation communities and educational programs. Fauna Europaea was formally accepted as an INSPIRE standard for Europe, as part of the European Taxonomic Backbone established in PESI.Fauna Europaea provides a public web portal at faunaeur.org with links to other key biodiversity services, is installed as a taxonomic backbone in wide range of biodiversity services and actively contributes to biodiversity informatics innovations in various initiatives and EC programs.
With biodiversity research activities being increasingly shifted to the web, the need for a system of persistent and stable identifiers for physical collection objects becomes increasingly pressing. The Consortium of European Taxonomic Facilities agreed on a common system of HTTP-URI-based stable identifiers which is now rolled out to its member organizations. The system follows Linked Open Data principles and implements redirection mechanisms to human-readable and machine-readable representations of specimens facilitating seamless integration into the growing semantic web. The implementation of stable identifiers across collection organizations is supported with open source provider software scripts, best practices documentations and recommendations for RDF metadata elements facilitating harmonized access to collection information in web portals. Database URL: http://cetaf.org/cetaf-stable-identifiers
BackgroundReliable taxonomy underpins communication in all of biology, not least nature conservation and sustainable use of ecosystem resources. The flexibility of taxonomic interpretations, however, presents a serious challenge for end-users of taxonomic concepts. Users need standardised and continuously harmonised taxonomic reference systems, as well as high-quality and complete taxonomic data sets, but these are generally lacking for non-specialists. The solution is in dynamic, expertly curated web-based taxonomic tools.The Pan-European Species-directories Infrastructure (PESI) worked to solve this key issue by providing a taxonomic e-infrastructure for Europe. It strengthened the relevant social (expertise) and information (standards, data and technical) capacities of five major community networks on taxonomic indexing in Europe, which is essential for proper biodiversity assessment and monitoring activities. The key objectives of PESI were: 1) standardisation in taxonomic reference systems, 2) enhancement of the quality and completeness of taxonomic data sets and 3) creation of integrated access to taxonomic information.New informationThis paper describes the results of PESI and its future prospects, including the involvement in major European biodiversity informatics initiatives and programs.
Abstract:In 2010, we launched the Global Index of Vegetation-Plot Databases (GIVD; http://www.givd.info), an internet-based resource offering metadata of existing electronic vegetation databases. On 11 May 2012, 182 databases containing more than 2.8 million non-overlapping vegetation plots had been registered in GIVD. The majority of these plots were from European databases (123 databases, 1.87 million plots). The oldest plot record dated from 1864, but the vast majority of the plots had been collected since 1970. Most of the plots had areas between 1 and 1,000 m². A total of 68 databases also stored time series and/or nested-plot data. The vegetation-plot data registered in GIVD constitute a major resource for biodiversity research, not only through the large number of species occurrence records, but especially due to the storage of species co-occurrence information, complemented with site-specific structural data and plot-based environmental data. The increased ease of discovering and accessing such datasets, owing to their registration in GIVD, offers significant opportunities for large-scale studies in areas such as community ecology, macroecology, and global-change research. The results from such studies could be very important for nature conservation practice and policy.
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