Arbuscular mycorrhizal fungi are increasingly used in organic cropping systems to increase yields. Although cover crops are largely used in organic farming, there is little knowledge on the impact of cover crops on native mycorrhizal fungi. Here, we studied the effect of cover crop diversity on mycorrhizal colonization in subsequent organic maize cultivars differing in the level of genetic diversity. Experiments were conducted from 2010 to 2012 in a Mediterranean environment. First Indian mustard (Brassica juncea L. Czern.), hairy vetch (Vicia villosa Roth), a mix of seven cover crop species (Mix), and natural vegetation (Control) were cultivated as winter cover crops. Then, an organically and a conventionally bred maize hybrid and three organically bred composite cross populations were cultivated. Mycorrhizal propagule dynamics were measured. Results at juvenile stage show a higher mycorrhizal colonization in maize plants grown after hairy vetch, of 35.0 %, and Mix cover crops, of 29.4 %, compared to Indian mustard, of 20.9 %, and Control, of 21.3 %. The potential of soil mycorrhization decreased of 56.5 % following Indian mustard, higher than that of other cover crops, of 34.1-47.3 %. This finding could be explained by the release of isothiocyanates in soils. Moreover, maize shoot biomass, nitrogen, and phosphorus content across all maize genotypes at juvenile stage increased with mycorrhizal colonization. These findings provide the first evidence of the greater role played by cover crop identity in the enhancement of early mycorrhizal colonization of the subsequent crop and of soil mycorrhizal activity.

Climbing bean (Phaseolus vulgaris L.) production in Kenya is greatly undermined by low soil fertility, especially in agriculturally prolific areas. The use of effective native rhizobia inoculants to promote nitrogen fixation could be beneficial in climbing bean production. In this study, we carried out greenhouse and field experiments to evaluate symbiotic efficiency, compare the effect of native rhizobia and commercial inoculant on nodulation, growth and yield parameters of mid-altitude climbing bean (MAC 13 and MAC 64) varieties. The greenhouse experiment included nine native rhizobia isolates, a consortium of native isolates, commercial inoculant Biofix, a mixture of native isolates + Biofix, nitrogen treated control and a non-inoculated control. In the field experiments, the treatments included the best effective native rhizobia isolate ELM3, a consortium of native isolates, a commercial inoculant Biofix, a mixture of native isolates + Biofix, and a non-inoculated control. Remarkably, four native rhizobia isolates ELM3, ELM4, ELM5, and ELM8 showed higher symbiotic efficiencies compared to the Biofix. Interestingly, there was no significant difference in symbiotic efficiency between the two climbing bean varieties. Field results demonstrated a significant improvement in nodule dry weight and seed yields of MAC 13 and MAC 64 climbing bean varieties upon rhizobia inoculation when compared to the non-inoculated controls. Inoculation with ELM3 isolate resulted to the highest seed yield of 4,397.75 kg ha−1, indicating 89% increase over non-inoculated control (2,334.81 kg ha−1) and 30% increase over Biofix (3,698.79 kg ha−1). Farm site significantly influenced nodule dry weight and seed yields. This study, therefore, revealed the potential of native rhizobia isolates to enhance delivery of agroecosystem services including nitrogen fixation and bean production. Further characterization and mapping of the native isolates will be imperative in development of effective and affordable commercial inoculants.

Arbuscular mycorrhizal fungal (AMF) communities are fundamental in organic cropping systems where they provide essential agro-ecosystem services, improving soil fertility and sustaining crop production. They are affected by agronomic practices, but still, scanty information is available about the role of specific crops, crop rotations and the use of winter cover crops on the AMF community compositions at the field sites. A field experiment was conducted to elucidate the role of diversified cover crops and AMF inoculation on AMF diversity in organic tomato. Tomato, pre-inoculated at nursery with two AMF isolates, was grown following four cover crop treatments: Indian mustard, hairy vetch, a mixture of seven species and a fallow. Tomato root colonization at flowering was more affected by AMF pre-transplant inoculation than by the cover crop treatments. An enormous species richness was found by morphological spore identification: 58 AMF species belonging to 14 genera, with 46 and 53 species retrieved at the end of cover crop cycle and at tomato harvest, respectively. At both sampling times, AMF spore abundance was highest in hairy vetch, but after tomato harvest, AMF species richness and diversity were lower in hairy vetch than in the cover crop mixture and in the mustard treatments. A higher AMF diversity was found at tomato harvest, compared with the end of the cover crop cycle, independent of the cover crop and pre-transplant AMF inoculation. Our findings suggest that seasonal and environmental factors play a major role on AMF abundance and diversity than short-term agronomic practices, including AMF inoculation. The huge AMF diversity is explained by the field history and the Mediterranean environment, where species characteristic of temperate and sub-tropical climates co-occur.

Smallholder agroecosystems play a key role in the world's food security providing more than 50% of the food produced globally. These unique agroecosystems face a myriad of challenges and remain largely unsupported, yet they are thought to be a critical resource for feeding the projected increasing human population in the coming years. The new challenge to increase food production through agricultural intensification in shrinking per capita arable lands, dwindling world economies, and unpredictable climate change, has led to over-dependence on agrochemical inputs that are often costly and hazardous to both human and animal health and the environment. To ensure healthy crop production approaches, the search for alternative ecofriendly strategies that best fit to the smallholder systems have been proposed. The most common and widely accepted solution that has gained a lot of interest among researchers and smallholder farmers is the use of biological agents; mainly plant growth promoting microorganisms (PGPMs) that provide essential agroecosystem services within a holistic vision of enhancing farm productivity and environmental protection. PGPMs play critical roles in agroecological cycles fundamental for soil nutrient amelioration, crop nutrient improvement, plant tolerance to biotic and abiotic stresses, biocontrol of pests and diseases, and water uptake. This review explores different research strategies involving the use of beneficial microorganisms, within the unique context of smallholder agroecosystems, to promote sustainable maintenance of plant and soil health and enhance agroecosystem resilience against unpredictable climatic perturbations.

Citation: Mugendi Njeru, E. (2013). Crop diversification:A potential strategy to mitigate food insecurity by smallholders in sub-Saharan Africa. Journal of Agriculture, Food Systems, and Community Development, 3(4) AbstractAs of 2010, about 239 million people in subSaharan Africa (SSA) were projected to be undernourished. With this figure expected to rise, concerted efforts to boost food production at the realm of global challenges such as climate instability and decline of nonrenewable resources are imperative. Food production in SSA presently faces the unprecedented challenge of producing sufficient and healthy food for the surging human population, while seeking to conserve the environment and reduce the use of nonrenewable resources and energy. Although over the past half century conventional agriculture has generally improved agricultural production in many parts of the world, this has come at high economic and environmental costs since intensive agriculture relies heavily on off-farm inputs. Conventional agriculture is also dependent on the use of specific crop varieties or hybrids that have been bred specifically to exploit high-input conditions. Conversely, crop varieties used in high-input systems are not often adapted to low-input farming, a key element of many smallholder farming systems. The exploitation of crop genetic diversity as a strategy to increase food production by smallholders in SSA and elsewhere in the world has not been critically examined. This aspect may provide new insights to global food insecurity since crop diversification is a fundamental tool for improving yield stability and crop resilience under changing climatic conditions.

Arbuscular mycorrhizal fungi (AMF) establish mutualistic associations with the most important agricultural food and feed crops, sustaining plant growth, nutrient uptake and tolerance of biotic and abiotic stresses. Scanty information is available on the role played by crop identity and diversity as a driving force shaping AMF species communities in the field, in particular in low-input and organic farming, where crop rotation and the use of cover crops are common practices. Here, using a molecular approach, we investigated whether plant communities established in low and high diversity cover crop treatments affect the composition of native AMF root communities of subsequent maize in a Mediterranean organic agroecosystem. A total of 16 AMF sequence types were detected, with Acaulospora cavernata as the most abundant phylotype, accounting for 37.4 % of the sequences, followed by Funneliformis mosseae, Claroideoglomus lamellosum and Rhizoglomus intraradices. Sequences matching to Funneliformis caledonium, Diversispora aurantia, Diversispora epigaea and Archaeospora schenckii corresponded to less than 2.0 % of the total. The most abundant sequences retrieved in plants from cover crop treatments were represented by A. cavernata, while sequences in maize roots were related to F. mosseae, R. intraradices and Glomus sp. Such data show for the first time a change in the composition of native AMF communities colonizing maize roots, which was independent of the identity and diversity of the preceding crop. Our findings suggest that host preference may represent a strong driver of AMF community dynamics in agroecosystems, differentially boosting or depressing AMF species, possibly in relation to their functional significance.

The increasing interest in the use of rhizobia as biofertilizers in smallholder agricultural farming systems of the Sub-Saharan Africa has prompted the identification of a large number of tropical rhizobia strains and led to studies on their diversity. Inoculants containing diverse strains of rhizobia have been developed for use as biofertilizers to promote soil fertility and symbiotic nitrogen fixation in legumes. In spite of this success, there is paucity of data on rhizobia diversity and genetic variation associated with the newly released and improved mid-altitude climbing (MAC) bean lines (Phaseolus vulgaris L.). In this study, 41 rhizobia isolates were obtained from the root nodules of MAC 13 and MAC 64 climbing beans grown in upper and lower midland agro-ecological zones of Eastern Kenya. Eastern Kenya was chosen because of its high production potential of diverse common bean cultivars. The rhizobia isolates were characterized phenotypically on the basis of colony morphology, growth and biochemical features. Rhizobia diversity from the different regions of Eastern Kenya was determined based on the amplified ribosomal DNA restriction analysis (ARDRA) of PCR amplified 16S rRNA genes using Msp I, EcoR I, and Hae III restriction enzymes. Notably, native rhizobia isolates were morphologically diverse and grouped into nine different morphotypes. Correspondingly, the analysis of molecular variance based on restriction digestion of 16S rRNA genes showed that the largest proportion of significant (p < 0.05) genetic variation was distributed within the rhizobia population (97.5%) than among rhizobia populations (1.5%) in the four agro-ecological zones. The high degree of morphological and genotypic diversity of rhizobia within Eastern Kenya shows that the region harbors novel rhizobia strains worth exploiting to obtain strains efficient in biological nitrogen fixation with P. vulgaris L. Genetic sequence analysis of the isolates and testing for their symbiotic properties should be carried out to ascertain their identity and functionality in diverse environments.

Background Insecticide resistance poses a growing challenge to malaria vector control in Kenya and around the world. Following evidence of associations between the mosquito microbiota and insecticide resistance, the microbiota of Anopheles gambiae sensu stricto (s.s.) from Tulukuyi village, Bungoma, Kenya, with differing permethrin resistance profiles were comparatively characterized. Methods Using the CDC bottle bioassay, 133 2–3 day-old, virgin, non-blood fed female F1 progeny of field-caught An. gambiae s.s. were exposed to five times (107.5 µg/ml) the discriminating dose of permethrin. Post bioassay, 50 resistant and 50 susceptible mosquitoes were subsequently screened for kdr East and West mutations, and individually processed for microbial analysis using high throughput sequencing targeting the universal bacterial and archaeal 16S rRNA gene. Results 47 % of the samples tested (n = 133) were resistant, and of the 100 selected for further processing, 99 % were positive for kdr East and 1 % for kdr West. Overall, 84 bacterial taxa were detected across all mosquito samples, with 36 of these shared between resistant and susceptible mosquitoes. A total of 20 bacterial taxa were unique to the resistant mosquitoes and 28 were unique to the susceptible mosquitoes. There were significant differences in bacterial composition between resistant and susceptible individuals (PERMANOVA, pseudo-F = 2.33, P = 0.001), with presence of Sphingobacterium, Lysinibacillus and Streptococcus (all known pyrethroid-degrading taxa), and the radiotolerant Rubrobacter, being significantly associated with resistant mosquitoes. On the other hand, the presence of Myxococcus, was significantly associated with susceptible mosquitoes. Conclusions This is the first report of distinct microbiota in An. gambiae s.s. associated with intense pyrethroid resistance. The findings highlight differentially abundant bacterial taxa between resistant and susceptible mosquitoes, and further suggest a microbe-mediated mechanism of insecticide resistance in mosquitoes. These results also indicate fixation of the kdr East mutation in this mosquito population, precluding further analysis of its associations with the mosquito microbiota, but presenting the hypothesis that any microbe-mediated mechanism of insecticide resistance would be likely of a metabolic nature. Overall, this study lays initial groundwork for understanding microbe-mediated mechanisms of insecticide resistance in African mosquito vectors of malaria, and potentially identifying novel microbial markers of insecticide resistance that could supplement existing vector surveillance tools.