The past 20 years have witnessed a renaissance of dye chemistry, moving from traditional colorant research toward functional materials. Different from traditional colorant research, the properties of functional materials are governed extensively by intermolecular interactions, thereby entailing significant limitations to the classical approach based on molecular structure− molecular property (color, emission, redox properties, etc.) relationships for the respective dye molecules. However, as discussed in this Perspective, such an approach can be pursued for dye aggregates, and in many cases already well-tailored dimers are sufficient to understand the influence of supramolecular organization on the functional properties of ground and photoexcited states. Illustrative examples will be given for exciton coupling and charge-transfer coupling and how these properties relate to desirable functions such as fluorescence, symmetry-breaking charge separation, and singlet fission in molecular aggregates. While the progress in this research so far mostly originated from studies on well-defined folded and self-assembled structures composed of only two dye molecules, future work will have to advance toward larger oligomers of specific size and geometry. Furthermore, future experimental studies should be guided to a larger extent by theoretical predictions that may be supported by machine learning algorithms and new concepts from artificial intelligence. Beyond already pursued calculations of potential energy landscapes, we suggest the development of theoretical approaches that identify the most desirable dye aggregate structures for a particular property on functional energy landscapes.

Viral attachment to specific host receptors is the first step in viral infection and serves an essential function in the selection of target cells. Mammalian reoviruses are highly useful experimental models for studies of viral pathogenesis and show promise as vectors for oncolytics and vaccines. Reoviruses engage cells by binding to carbohydrates and the immunoglobulin superfamily member, junctional adhesion molecule-A (JAM-A). JAM-A exists at the cell surface as a homodimer formed by extensive contacts between its N-terminal immunoglobulin-like domains. We report the crystal structure of reovirus attachment protein σ1 in complex with a soluble form of JAM-A. The σ1 protein disrupts the JAM-A dimer, engaging a single JAM-A molecule via virtually the same interface that is used for JAM-A homodimerization. Thus, reovirus takes advantage of the adhesive nature of an immunoglobulin-superfamily receptor by usurping the ligand-binding site of this molecule to attach to the cell surface. The dissociation constant (KD) of the interaction between σ1 and JAM-A is 1,000-fold lower than that of the homophilic interaction between JAM-A molecules, indicating that JAM-A strongly prefers σ1 as a ligand. Analysis of reovirus mutants engineered by plasmid-based reverse genetics revealed residues in σ1 required for binding to JAM-A and infectivity of cultured cells. These studies define biophysical mechanisms of reovirus cell attachment and provide a platform for manipulating reovirus tropism to enhance vector targeting.

Exciton coupling is of fundamental importance and determines functional properties of organic dyes in (opto-)electronic and photovoltaic devices. Here we show that strong exciton coupling is not limited to the situation of equal chromophores as often assumed. Quadruple dye stacks were obtained from two bis(merocyanine) dyes with same or different chromophores, respectively, which dimerize in less-polar solvents resulting in the respective homo- and heteroaggregates. The structures of the quadruple dye stacks were assigned by NMR techniques and unambiguously confirmed by single-crystal X-ray analysis. The heteroaggregate stack formed from the bis(merocyanine) bearing two different chromophores exhibits remarkably different ultraviolet/vis absorption bands compared with those of the homoaggregate of the bis(merocyanine) comprising two identical chromophores. Quantum chemical analysis based on an extension of Kasha's exciton theory appropriately describes the absorption properties of both types of stacks revealing strong exciton coupling also between different chromophores within the heteroaggregate.

We have synthesized a series of dipolar squaraine dyes that contain dicyanovinyl groups as acceptor and benzannulated five-membered ring heterocycles with alkyl chains of varied length as donor moieties. Based on these squaraines, thin-film transistors (TFT) were fabricated by spin coating and solution shearing. Moreover, with one of these squaraine derivatives vacuum-deposited TFTs were prepared as well. Our detailed studies revealed that the transistor performance of the present series of squaraines is strongly dependent on their structural features as well as on the processing method of thin films. Thus, solution-sheared OTFTs of selenium squaraine bearing dodecyl substituents (denoted as Se-SQ-C12) performed best with a maximum hole mobility of 0.45 cm(2) V(-1) s(-1), which is by far the highest value yet reported for OTFTs based on squaraines. This value was even surpassed by vacuum-deposited thin films of n-butyl-substituted selenium squaraine Se-SQ-C4, the only sublimable compound in this series, exhibiting a record hole mobility of 1.3 cm(2) V(-1) s(-1). Furthermore, we have investigated the morphology of the thin films and the molecular packing of these squaraine dyes by optical spectroscopy, atomic force microscopy, and X-ray diffraction. These studies revealed a relationship between the molecular structure, packing motif, thin-film morphology, and transistor performance of the squaraine dyes. From the supramolecular point of view two packing features discovered in the single crystal structure of Se-SQ-C8 are of particular interest with regard to the structure-functionality relationship: The first is the slipped and antiparallel π-stacking motif which ensures cancellation of the molecules' dipole moments and J-type absorption band formation in thin films. The second is the presence of CN···Se noncovalent bonds which show similarities to the more common halogen-bonding interactions and which interconnect the individual one-dimensional slipped π-stacks, thus leading to two-dimensional percolation pathways along the source-drain direction.

A series of well-defined chromophore stacks is obtained upon self-assembly of merocyanine and bis­(merocyanine) dyes in nonpolar solvents. Careful design of the spacer moieties linking the dipolar chromophores within the bis­(merocyanine) dyes allows one to direct the dipole–dipole interaction driven aggregation into stacks of desired size from dimer up to octamer. The spacer-encoded self-assembly process was investigated by UV/vis absorption spectroscopy showing an increase of the hypsochromic shift with increasing stack size. The structure of the largest aggregate comprising eight chromophores was analyzed by 1D and 2D nuclear magnetic resonance spectroscopic studies revealing a perfectly interdigitated centrosymmetric organization of the dipolar dyes and concomitant annihilation of the ground state dipole moment is observed in the UV/vis absorption spectra. This unprecedented series of dye stacks from dimer to octamer enabled a systematic study of the optical absorption properties in dependence of the stack size disclosing that the absorption features can be rationalized by molecular exciton theory. Our results show that the noncovalent synthesis approach based on dipolar aggregation is suitable for the design of well-defined dye aggregates of specific size, allowing in-depth studies to manifest structure–property relationships.