Secondary metabolites are ubiquitous in bacteria, but by definition, they are thought to be nonessential. Highly toxic secondary metabolites such as patellazoles have been isolated from marine tunicates, where their exceptional potency and abundance implies a role in chemical defense, but their biological source is unknown. Here, we describe the association of the tunicate Lissoclinum patella with a symbiotic α-proteobacterium, Candidatus Endolissoclinum faulkneri, and present chemical and biological evidence that the bacterium synthesizes patellazoles. We sequenced and assembled the complete Ca. E. faulkneri genome, directly from metagenomic DNA obtained from the tunicate, where it accounted for 0.6% of sequence data. We show that the large patellazoles biosynthetic pathway is maintained, whereas the remainder of the genome is undergoing extensive streamlining to eliminate unneeded genes. The preservation of this pathway in streamlined bacteria demonstrates that secondary metabolism is an essential component of the symbiotic interaction.ascidian | trans-acyltransferase | natural products | polyketide | biosynthesis

The morphology and cellulosic composition of the tunic was studied in pelagic tunicates (3 pyrosomas, 2 doliolids, and 13 salps). The tunic is transparent and gelatinous, consisting of an electron-dense cuticular layer with a fibrous tunic matrix. The thickness and density of the cuticular layer and of the tunic matrix differ from species to species. In some salps, the cuticular layer has numerous minute protrusions that are structurally identical to those found in several ascidians. Free mesenchymal cells (tunic cells) are distributed in the tunic. Whereas the number of tunic cells in the pyrosomas is similar to that in ascidians, there are many fewer tunic cells in doliolids and salps. These differences may be caused by the different functions of the tunic in each group. The existence of cellulose in the tunic was confirmed using electron diffraction in all of the species studied thus far. Their diffractograms indicate that the cellulose microfibrils consist of nearly pure I{beta} of the allomorph. These results show that tunic morphology and cellulosic composition are similar in ascidians and thaliaceans (pyrosomas, doliolids, and salps). The tunic is considered to be a homologous tissue in these animals, and their most recent common ancestor would have possessed this tissue.

Abstract. Tunic cells are free cells distributed in the tunic, the integumentary matrix of tunicates. In ascidians, various types of tunic cells have been described both in solitary and in colonial species. Many of them are functionally specialized and are related to the protection of the animal, such as phagocytosis to prevent infection, acid storage to avoid predation, and pigmentation to protect against solar radiation. While some tunic cells are known to play a role in colonial allorecognition, bioluminescence, and algal symbiosis, the functional roles of many cell types still remain to be determined. The composition of tunic‐cell types varies among ascidian species, most likely reflecting the functional requirements of the tunic in each species. Although some cell types, e.g., tunic net cells and tunic bladder cells, are restricted to particular taxa of ascidians, tunic phagocytes are found in all known ascidians. Therefore, tunic phagocytes are hypothesized to be basal and shared with ancestral tunicates. In some ascidians, phagocytic cells are involved in other functions, such as pigmentation, intracellular photosymbiosis, and bioluminescence. These specialized phagocytic cells are hypothesized to be derived from tunic phagocytes, suggesting that tunic cells have a high potential to diversify and evolve a wide variety of cellular functions.

The sea slug Plakobranchus ocellatus (Sacoglossa, Gastropoda) retains photosynthetically active chloroplasts from ingested algae (functional kleptoplasts) in the epithelial cells of its digestive gland for up to 10 months. While its feeding behavior has not been observed in natural habitats, two hypotheses have been proposed: 1) adult P. ocellatus uses kleptoplasts to obtain photosynthates and nutritionally behaves as a photoautotroph without replenishing the kleptoplasts; or 2) it behaves as a mixotroph (photoautotroph and herbivorous consumer) and replenishes kleptoplasts continually or periodically. To address the question of which hypothesis is more likely, we examined the source algae for kleptoplasts and temporal changes in kleptoplast composition and nutritional contribution. By characterizing the temporal diversity of P. ocellatus kleptoplasts using rbcL sequences, we found that P. ocellatus harvests kleptoplasts from at least 8 different siphonous green algal species, that kleptoplasts from more than one species are present in each individual sea slug, and that the kleptoplast composition differs temporally. These results suggest that wild P. ocellatus often feed on multiple species of siphonous algae from which they continually obtain fresh chloroplasts. By estimating the trophic position of wild and starved P. ocellatus using the stable nitrogen isotopic composition of amino acids, we showed that despite the abundance of kleptoplasts, their photosynthates do not contribute greatly to the nutrition of wild P. ocellatus, but that kleptoplast photosynthates form a significant source of nutrition for starved sea slugs. The herbivorous nature of wild P. ocellatus is consistent with insights from molecular analyses indicating that kleptoplasts are frequently replenished from ingested algae, leading to the conclusion that natural populations of P. ocellatus do not rely on photosynthesis but mainly on the digestion of ingested algae.

Prochloron is an oxygenic photosynthetic bacterium that lives in obligate symbiosis with didemnid ascidians, such as Diplosoma spp., Lissoclinum spp. and Trididemnum spp. This study investigated the genetic diversity of the genus Prochloron by constructing a phylogenetic tree based on the 16S rRNA gene sequences of 27 isolates from 11 species of didemnid ascidians collected from Japan, Australia and the USA. The 27 isolates formed three phylogenetic groups: 22 of the samples were identified to be closely related members of Prochloron. Two samples, isolated from Trididemnum nubilum and Trididemnum clinides, were found to belong to the species Synechocystis trididemni, the closest relative of Prochloron. Three isolates formed a separate group from both Prochloron sp. and S. trididemni, potentially indicating a new symbiotic phylotype. Genomic polymorphism analysis, employing cyanobacterium-specific highly iterative palindrome 1 repeats, could not delineate the isolates further. For the Prochloron sp. isolates, the phylogenetic outcome was independent of host species and geographic origin of the sample indicating a low level of host specificity, low genetic variation within the taxon and possibly a lack of a host-symbiont relationship during reproductive dispersal. This study contributes significantly to the understanding of Prochloron diversity and phylogeny, and implications for the evolutionary relationship of prochlorophytes, cyanobacteria and chloroplasts are also discussed.