Through the continuous growth of their carbonate skeletons, corals record information about past environmental conditions and their effect on colony fitness. Here, we characterize century-scale growth records of inner and outer reef corals across ~200 km of the Florida Keys Reef Tract (FKRT) using skeletal cores extracted from two ubiquitous reef-building species, Siderastrea siderea and Pseudodiploria strigosa. We find that corals across the FKRT have sustained extension and calcification rates over the past century but have experienced a long-term reduction in skeletal density, regardless of reef zone. Notably, P. strigosa colonies exhibit temporary reef zone-dependent reductions in extension rate corresponding to two known extreme temperature events in 1969-1970 and 1997-1998. We propose that the subtropical climate of the FKRT may buffer corals from chronic growth declines associated with climate warming, though the significant reduction in skeletal density may indicate underlying vulnerability to present and future trends in ocean acidification.
We consider a rate control problem for an N -particle weakly interacting finite state Markov process. The process models the state evolution of a large collection of particles and allows for multiple particles to change state simultaneously. Such models have been proposed for large communication systems (e.g. ad hoc wireless networks) but are also suitable for other settings such as chemical-reaction networks. An associated diffusion control problem is presented and we show that the value function of the N -particle controlled system converges to the value function of the limit diffusion control problem as N → ∞. The diffusion coefficient in the limit model is typically degenerate, however under suitable conditions there is an equivalent formulation in terms of a controlled diffusion with a uniformly non-degenerate diffusion coefficient. Using this equivalence, we show that near optimal continuous feedback controls exist for the diffusion control problem. We then construct near asymptotically optimal control policies for the N -particle system based on such continuous feedback controls. Results from some numerical experiments are presented.AMS 2000 subject classifications: Primary 60K35, 60H30, 93E20; secondary 60J28, 60J70, 60K25, 91B70.
Natural selection on beneficial or deleterious alleles results in an increase or decrease, respectively, of their frequency within the population. Due to chromosomal linkage, the dynamics of the selected site affect the genetic variation at nearby neutral loci in a process commonly referred to as genetic hitchhiking. Changes in population size, however, can yield patterns in genomic data that mimic the effects of selection. Accurately modeling these dynamics is thus crucial to understanding how selection and past population size changes impact observed patterns of genetic variation. Here, we model the evolution of haplotype frequencies with the Wright-Fisher diffusion to study the impact of selection on linked neutral variation. Explicit solutions are not known for the dynamics of this diffusion when selection and recombination act simultaneously. Thus, we present a method for numerically evaluating the Wright-Fisher diffusion dynamics of two linked loci separated by a certain recombination distance when selection is acting. We can account for arbitrary population size histories explicitly using this approach. A key step in the method is to express the moments of the associated transition density, or sampling probabilities, as solutions to ordinary differential equations. Numerically solving these differential equations relies on a novel accurate and numerically efficient technique to estimate higher order moments from lower order moments. We demonstrate how this numerical framework can be used to quantify the reduction and recovery of genetic diversity around a selected locus over time and elucidate distortions in the site-frequency-spectra of neutral variation linked to loci under selection in various demographic settings. The method can be readily extended to more general modes of selection and applied in likelihood frameworks to detect loci under selection and infer the strength of the selective pressure.
Caching plays a crucial role in networking systems to reduce the load on the network and has become an ubiquitous functionality available at each router. One of the commonly used mechanisms, Least Recently Used (LRU), works well for identical file sizes. However, for asymmetric file sizes, the performance deteriorates. This paper proposes an adaptation to LRU strategy, called gLRU, where the file is sub-divided into equal-sized chunks. In this strategy, a chunk of the newly requested file is added in the cache, and a chunk of the least-recently-used file is removed from the cache. Even though approximate analysis for the hit rate has been studied for LRU, the analysis does not extend to gLRU since the metric of interest is no longer the hit rate as the cache has partial files. This paper provides a novel approximation analysis for this policy where the cache may have partial file contents. The approximation approach is validated by simulations. Further, gLRU outperforms LRU strategy for Zipf file popularity distribution and censored Pareto file size distribution for the file download times. Video streaming applications can further use the partial cache contents to help the stall durations significantly, and the numerical results indicate significant improvements (29%) in stall durations using the gLRU strategy as compared to the LRU strategy.
In large storage systems, files are often coded across several servers to improve reliability and retrieval speed. We study load balancing under the batch sampling routeing scheme for a network of n servers storing a set of files using the maximum distance separable (MDS) code (cf. Li (2016)). Specifically, each file is stored in equally sized pieces across L servers such that any k pieces can reconstruct the original file. When a request for a file is received, the dispatcher routes the job into the k-shortest queues among the L for which the corresponding server contains a piece of the file being requested. We establish a law of large numbers and a central limit theorem as the system becomes large (i.e. n → ∞), for the setting where all interarrival and service times are exponentially distributed. For the central limit theorem, the limit process take values in ℓ2, the space of square summable sequences. Due to the large size of such systems, a direct analysis of the n-server system is frequently intractable. The law of large numbers and diffusion approximations established in this work provide practical tools with which to perform such analysis. The power-of-d routeing scheme, also known as the supermarket model, is a special case of the model considered here.
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