The efficiency and scalability of plagiarism detection systems have become a major challenge due to the vast amount of available textual data in several languages over the Internet. Plagiarism occurs in different levels of obfuscation, ranging from the exact copy of original materials to text summarization. Consequently, designed algorithms to detect plagiarism should be robust to the diverse languages and different type of obfuscation in plagiarism cases. In this paper, we employ text embedding vectors to compare similarity among documents to detect plagiarism. Word vectors are combined by a simple aggregation function to represent a text document. This representation comprises semantic and syntactic information of the text and leads to efficient text alignment among suspicious and original documents. By comparing representations of sentences in source and suspicious documents, pair sentences with the highest similarity are considered as the candidates or seeds of plagiarism cases. To filter and merge these seeds, a set of parameters, including Jaccard similarity and merging threshold, are tuned by two different approaches: offline tuning and online tuning. The offline method, which is used as the benchmark, regulates a unique set of parameters for all types of plagiarism by several trials on the training corpus. Experiments show improvements in performance by considering obfuscation type during threshold tuning. In this regard, our proposed online approach uses two statistical methods to filter outlier candidates automatically by their scale of obfuscation. By employing the online tuning approach, no distinct training dataset is required to train the system. We applied our proposed method on available datasets in English, Persian and Arabic languages on the text alignment task to evaluate the robustness of the proposed methods from the language perspective as well. As our experimental results confirm, our efficient approach can achieve considerable performance on the different datasets in various languages. Our online threshold tuning approach without any training datasets works as well as, or even in some cases better than, the training-base method.
Motivation
Genomic region sets summarize functional genomics data and define locations of interest in the genome such as regulatory regions or transcription factor binding sites. The number of publicly available region sets has increased dramatically, leading to challenges in data analysis.
Results
We propose a new method to represent genomic region sets as vectors, or embeddings, using an adapted word2vec approach. We compared our approach to two simpler methods based on interval unions or term frequency-inverse document frequency and evaluated the methods in three ways: First, by classifying the cell line, antibody, or tissue type of the region set; second, by assessing whether similarity among embeddings can reflect simulated random perturbations of genomic regions; and third, by testing robustness of the proposed representations to different signal thresholds for calling peaks. Our word2vec-based region set embeddings reduce dimensionality from more than a hundred thousand to 100 without significant loss in classification performance. The vector representation could identify cell line, antibody, and tissue type with over 90% accuracy. We also found that the vectors could quantitatively summarize simulated random perturbations to region sets and are more robust to subsampling the data derived from different peak calling thresholds. Our evaluations demonstrate that the vectors retain useful biological information in relatively lower-dimensional spaces. We propose that vector representation of region sets is a promising approach for efficient analysis of genomic region data.
Availability
https://github.com/databio/regionset-embedding
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