Recent regional reports and trends in biomonitoring suggest that insects are experiencing a multicontinental crisis that is apparent as reductions in abundance, diversity, and biomass. Given the centrality of insects to terrestrial ecosystems and the food chain that supports humans, the importance of addressing these declines cannot be overstated. The scientific community has understandably been focused on establishing the breadth and depth of the phenomenon and on documenting factors causing insect declines. In parallel with ongoing research, it is now time for the development of a policy consensus that will allow for a swift societal response. We point out that this response need not wait for full resolution of the many physiological, behavioral, and demographic aspects of declining insect populations. To these ends, we suggest primary policy goals summarized at scales from nations to farms to homes.
DNA analysis of predator faeces using high-throughput amplicon sequencing (HTS) enhances our understanding of predator-prey interactions. However, conclusions drawn from this technique are constrained by biases that occur in multiple steps of the HTS workflow. To better characterize insectivorous animal diets, we used DNA from a diverse set of arthropods to assess PCR biases of commonly used and novel primer pairs for the mitochondrial gene, cytochrome oxidase C subunit 1 (COI). We compared diversity recovered from HTS of bat guano samples using a commonly used primer pair "ZBJ" to results using the novel primer pair "ANML." To parameterize our bioinformatics pipeline, we created an arthropod mock community consisting of single-copy (cloned) COI sequences. To examine biases associated with both PCR and HTS, mock community members were combined in equimolar amounts both pre-and post-PCR. We validated our system using guano from bats fed known diets and using composite samples of morphologically identified insects collected in pitfall traps. In PCR tests, the ANML primer pair amplified 58 of 59 arthropod taxa (98%), whereas ZBJ amplified 24-40 of 59 taxa (41%-68%). Furthermore, in an HTS comparison of field-collected samples, the ANML primers detected nearly fourfold more arthropod taxa than the ZBJ primers. The additional arthropods detected include medically and economically relevant insect groups such as mosquitoes. Results revealed biases at both the PCR and sequencing levels, demonstrating the pitfalls associated with using HTS read numbers as proxies for abundance. The use of an arthropod mock community allowed for improved bioinformatics pipeline parameterization. K E Y W O R D SAMPtk, arthropod mock community, bat guano, dietary analysis, insectivore, next-generation sequencing *Indicates shared first authorship based on equal contributions.
Western monarch butterflies dropped by ∼97% of their average historic abundance between the 1980s and mid-2010s. In winter 2018-2019, the population plummeted even farther, to fewer than 30,000 monarchs, which represents a single year drop of 86% and a drop of >99% since the 1980s. The population may now be hovering at its quasi-extinction threshold. In this Perspectives piece, we: (1) Place the current status in context, (2) Highlight the most likely window during the annual life cycle when the population declined, (3) Review probable causes of long-term declines, and (4) Recommend steps that the public, policy makers, and land managers can take to recover western monarchs. The available studies reinforce the hypotheses that overwintering habitat loss and loss of central California breeding habitat, as well as pesticide use, are likely important contributors to the western monarch's long-term decline. The most limiting part of the migratory cycle appears to be concentrated during the overwintering stage and/or in early spring. If western monarchs are in fact entering an extinction vortex, they need extraordinary efforts-focused on the most vulnerable periods of the annual cycle-to save the migration. Critical short-term conservation priorities are to (1) Protect, manage and restore overwintering habitat, (2) Protect monarchs and their habitat from pesticides, (3) Restore breeding and migratory habitat in California, (4) Protect, manage, and restore summer breeding and fall migration monarch habitat throughout the western monarch's range, and (5) Fill research gaps to inform western monarch recovery strategies.
DNA analysis of predator feces using high-throughput amplicon sequencing (HTS) enhances our understanding of predator-prey interactions. However, conclusions drawn from this technique are constrained by biases that occur in multiple steps of the HTS workflow. To better characterize insectivorous animal diets, we used DNA from a diverse set of arthropods to assess PCR biases of commonly used and novel primer pairs for the mitochondrial gene, cytochrome oxidase C subunit 1 (CO1). We compared diversity recovered from HTS of bat guano samples using a commonly used primer pair “ZBJ” to results using the novel primer pair “ANML”. To parameterize our bioinformatics pipeline, we created an arthropod mock community consisting of single-copy (cloned) CO1 sequences. To examine biases associated with both PCR and HTS, mock community members were combined in equimolar amounts both pre- and post-PCR. We validated our system using guano from bats fed known diets and using composite samples of morphologically identified insects collected in pitfall traps. In PCR tests, the ANML primer pair amplified 58 of 59 arthropod taxa (98%) whereas ZBJ amplified 24 of 59 taxa (41%). Furthermore, in an HTS comparison of field-collected samples, the ANML primers detected nearly four-fold more arthropod taxa than the ZBJ primers. The additional arthropods detected include medically and economically relevant insect groups such as mosquitoes. Results revealed biases at both the PCR and sequencing levels, demonstrating the pitfalls associated with using HTS read numbers as proxies for abundance. The use of an arthropod mock community allowed for improved bioinformatics pipeline parameterization.
Drosophila suzukii (Diptera: Drosophilidae), known commonly as spotted wing drosophila, is a vinegar fly originating from South‐East Asia and a major pest to many soft‐skinned fruits. Due to the species recent arrival in North America in 2008, many fruit varieties are yet untested for susceptibility to infestation. While previous work has focused on Vitis vinifera, this study aimed to determine grape susceptibility of cold hardy varieties based on hybrids of V. labrusca, V. riparia and V. vinifera. Field sampling was conducted in Southern Wisconsin (USA) vineyards to establish adult and larval abundance and determine whether the number of adults caught in traps correlates with fruit infestation. Host susceptibility was further assessed through no‐choice bioassays of both intact and damaged fruits. The field study found D. suzukii adults present in all varieties, low larval abundance and no correlation between adult abundance and larval presence. Peak adult abundance occurred mid‐season between veraison and harvest, while larval infestation rates were highest near harvest. In laboratory no‐choice tests, significantly more eggs, larvae and adults occurred in damaged than undamaged grapes. In damaged grapes, larvae and adult abundance was comparable between varieties and to the highly susceptible control of undamaged raspberry; however, D. suzukii developed significantly faster in raspberry than grapes. Fruit characteristics (°Brix, titratable acidity, pH) in grapes were uncorrelated with D. suzukii performance. Together, these findings suggest that cold hardy grapes are overall resistant to D. suzukii if intact and highly susceptible if damaged.
Understanding the factors associated with declines of at‐risk species is an important first step in setting management and recovery targets. This step can be challenging when multiple aspects of climate and land use are changing simultaneously, and any or all could be contributing to population declines. We analyzed population trends of monarch butterflies in western North America in relation to likely environmental drivers. Unlike the larger eastern monarch population, past analyses of western monarchs have only evaluated the importance of climate (i.e., not land use) factors as drivers of abundance. We used partial least squares regression (PLSR) to evaluate the potential importance of changes in land use and climate variables. Trends in western monarch abundance were more strongly associated with land use variables than climate variables. Conclusions about importance of climate and land use variables were robust to changes in PLSR model structure. However, individual variables were too collinear to unambiguously separate their effects. We compared these conclusions to the more widely used technique of multiple regression, followed by multi‐model inference (MRMI). Naïve interpretation of MRMI results could be misleading, if collinearity were not taken into account. MRMI was also highly sensitive to variation in model construction. Our results suggest a two‐pronged approach to monarch conservation, specifically, starting efforts now to restore habitat, while also using experiments to more clearly delineate separate effects of climate and land use factors. They also demonstrate the utility of PLSR, a technique that is growing in use but is still relatively under‐appreciated in conservation biology.
scite is a Brooklyn-based organization that helps researchers better discover and understand research articles through Smart Citations–citations that display the context of the citation and describe whether the article provides supporting or contrasting evidence. scite is used by students and researchers from around the world and is funded in part by the National Science Foundation and the National Institute on Drug Abuse of the National Institutes of Health.
hi@scite.ai
10624 S. Eastern Ave., Ste. A-614
Henderson, NV 89052, USA
Copyright © 2024 scite LLC. All rights reserved.
Made with 💙 for researchers
Part of the Research Solutions Family.