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To identify differences in root plasticity patterns of two upland New Rice for Africa (NERICA) varieties, NERICA 1 and 4, in response to drought under conditions with contrasting soil profile characteristics, soil moisture gradients were imposed using a sloping bed system with depths ranging 30-65 cm and a line-source sprinkler system with a uniformly shallow soil layer of 20 cm depth. Varietal differences in shoot and root growths were identified only under moderate drought conditions, 11-18% v/v soil moisture content. Further, under moderate drought soil conditions where roots could penetrate into the deep soil layer, deep root development was greater in NERICA 4 than in NERICA 1, which contributed to maintaining dry matter production. However, under soil conditions with underground impediment to deep root development, higher shoot dry weight was noted for NERICA 1 than for NERICA 4 at 11-18% v/v soil moisture content, which was attributed to increased lateral root development in the shallow soil layer in NERICA 1. Enhanced lateral root development in the 0-20-cm soil layer was identified in NERICA 1 even under soil conditions without an impediment to deep root development; however, this did not contribute to maintaining dry matter production in upland rice. Thus, we show different root developmental traits associated with drought avoidance in the two NERICA varieties, and that desirable root traits for upland rice cultivation vary depending on the target soil environment, such as the distribution of soil moisture and root penetration resistance.

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The rapid progress in rice genotyping must be matched by advances in phenotyping. A better understanding of genetic variation in rice for drought response, root traits, and practical methods for studying them are needed. In this study, the OryzaSNP set (20 diverse genotypes that have been genotyped for SNP markers) was phenotyped in a range of field and container studies to study the diversity of rice root growth and response to drought. Of the root traits measured across more than 20 root experiments, root dry weight showed the most stable genotypic performance across studies. The environment (E) component had the strongest effect on yield and root traits. We identified genomic regions correlated with root dry weight, percent deep roots, maximum root depth, and grain yield based on a correlation analysis with the phenotypes and aus, indica, or japonica introgression regions using the SNP data. Two genomic regions were identified as hot spots in which root traits and grain yield were co-located; on chromosome 1 (39.7–40.7 Mb) and on chromosome 8 (20.3–21.9 Mb). Across experiments, the soil type/ growth medium showed more correlations with plant growth than the container dimensions. Although the correlations among studies and genetic co-location of root traits from a range of study systems points to their potential utility to represent responses in field studies, the best correlations were observed when the two setups had some similar properties. Due to the co-location of the identified genomic regions (from introgression block analysis) with QTL for a number of previously reported root and drought traits, these regions are good candidates for detailed characterization to contribute to understanding rice improvement for response to drought. This study also highlights the utility of characterizing a small set of 20 genotypes for root growth, drought response, and related genomic regions.

The plasticity in root system development (RSD) is a key trait for the adaptation of rice to mild drought. However, the enhanced RSD due to the plasticity may not be always a sole function of promoted lateral root (LR) production, but also of the integrated responses of nodal root (NR) development. In this study, we aimed to evaluate the effects of mild drought intensities on the development of the NR and LR, and their contribution to the entire RSD. We used six genotypes including KDML105 (indica, lowland adapted), a high lateral rooting ability genotype. The plants were grown up to heading or maturity stage for two years under soil with limited soil depth (20 cm) assuming the presence of the hardpan and at different moisture gradients generated by the line source sprinkler system. The effects of drought intensities generally differed between the development of NR and LR. In both years, all genotypes showed highest LR development under mild drought stress intensities. However, in some genotypes including KDML105, NR development was maintained in a limited soil moisture range only, which was narrower and wetter than that in which LR plasticity was expressed. Furthermore, the entire RSD was maintained only when both the NR and LR were simultaneously promoted or maintained. These results suggest that the NR have less plasticity than the LR in response to drought and the contribution of the plasticity in LR development to the entire RSD is dependent on both the soil moisture and nodal rooting ability.