Purpose To develop a bipolar multi‐echo MRI method for the accurate estimation of the adipose tissue fatty acid composition (FAC) using clinically relevant protocols at clinical field strength. Methods The proposed technique jointly estimates confounding factors (field map, R2*, eddy‐current phase) and triglyceride saturation state parameters by fitting multi‐echo gradient echo acquisitions to a complex signal model. The noise propagation behavior was improved by applying a low‐rank enforcing denoising technique and by addressing eddy‐current‐induced phase discrepancies analytically. The impact of the total echo train duration on the FAC parameter map accuracy was analyzed in an oil phantom at 3T. Accuracy and reproducibility assessment was based on in vitro oil phantom measurements at two field strengths (3T and 1.5T) and with two different protocols. Repeatability was assessed in vivo in patients (n = 8) with suspected fatty liver disease using test–retest acquisitions in the abdominal subcutaneous, perirenal and mesenteric fat depots. Results Echo train readout durations of at least five times the conventional in‐phase time were required for accurate FAC estimation in areas of high fat content. In vitro, linear regression and Bland–Altman analyses demonstrated strong (r > 0.94) and significant (P ≪ 0.01) correlations between measured and reference FACs for all acquisitions, with smaller overall intercepts and biases at 3T compared to 1.5T. In vivo, reported mean absolute differences between test and retest were 1.54%, 3.31%, and 2.63% for the saturated, mono‐unsaturated, and poly‐unsaturated fat component, respectively. Conclusions Accurate and reproducible MRI‐based FAC quantification within a breath‐hold is possible at clinical field strengths.

Recently, Magnetic Resonance Fingerprinting (MRF) was proposed as a quantitative imaging technique for the simultaneous acquisition of tissue parameters such as relaxation times T1 and T2. Although the acquisition is highly accelerated, the state-of-the-art reconstruction suffers from long computation times: Template matching methods are used to find the most similar signal to the measured one by comparing it to pre-simulated signals of possible parameter combinations in a discretized dictionary. Deep learning approaches can overcome this limitation, by providing the direct mapping from the measured signal to the underlying parameters by one forward pass through a network. In this work, we propose a Recurrent Neural Network (RNN) architecture in combination with a novel quantile layer. RNNs are well suited for the processing of time-dependent signals and the quantile layer helps to overcome the noisy outliers by considering the spatial neighbors of the signal. We evaluate our approach using in-vivo data from multiple brain slices and several volunteers, running various experiments. We show that the RNN approach with small patches of complex-valued input signals in combination with a quantile layer outperforms other architectures, e.g. previously proposed Convolutional Neural Networks for the MRF reconstruction reducing the error in T1 and T2 by more than 80 %.

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In tomographic imaging, anatomical structures are reconstructed by applying a pseudo-inverse forward model to acquired signals. Geometric information within this process is usually depending on the system setting only, i. e., the scanner position or readout direction. Patient motion therefore corrupts the geometry alignment in the reconstruction process resulting in motion artifacts. We propose an appearance learning approach recognizing the structures of rigid motion independently from the scanned object. To this end, we train a siamese triplet network to predict the reprojection error (RPE) for the complete acquisition as well as an approximate distribution of the RPE along the single views from the reconstructed volume in a multi-task learning approach. The RPE measures the motioninduced geometric deviations independent of the object based on virtual marker positions, which are available during training. We train our network using 27 patients and deploy a 21-4-2 split for training, validation and testing. In average, we achieve a residual mean RPE of 0.013 mm with an inter-patient standard deviation of 0.022 mm. This is twice the accuracy compared to previously published results. In a motion estimation benchmark the proposed approach achieves superior results in comparison with two state-of-the-art measures in nine out of twelve experiments. The clinical applicability of the proposed method is demonstrated on a motion-affected clinical dataset.

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