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Simple features are a standardized way of encoding spatial vector data (points, lines, polygons) in computers. The sf package implements simple features in R, and has roughly the same capacity for spatial vector data as packages sp, rgeos, and rgdal. We describe the need for this package, its place in the R package ecosystem, and its potential to connect R to other computer systems. We illustrate this with examples of its use. What are simple features?Features can be thought of as "things" or objects that have a spatial location or extent; they may be physical objects like a building, or social conventions like a political state. Feature geometry refers to the spatial properties (location or extent) of a feature, and can be described by a point, a point set, a linestring, a set of linestrings, a polygon, a set of polygons, or a combination of these. The simple adjective of simple features refers to the property that linestrings and polygons are built from points connected by straight line segments. Features typically also have other properties (temporal properties, color, name, measured quantity), which are called feature attributes. Not all spatial phenomena are easy to represent by "things or objects:" continuous phenoma such as water temperature or elevation are better represented as functions mapping from continuous or sampled space (and time) to values (Scheider et al., 2016), and are often represented by raster data rather than vector (points, lines, polygons) data.
We present new spatio-temporal geostatistical modelling and interpolation capabilities of the R package gstat. Various spatio-temporal covariance models have been implemented, such as the separable, product-sum, metric and sum-metric models. In a real-world application we compare spatiotemporal interpolations using these models with a purely spatial kriging approach. The target variable of the application is the daily mean PM 10 concentration measured at rural air quality monitoring stations across Germany in 2005. R code for variogram fitting and interpolation is presented in this paper to illustrate the workflow of spatio-temporal interpolation using gstat. We conclude that the system works properly and that the extension of gstat facilitates and eases spatio-temporal geostatistical modelling and prediction for R users.
This document describes classes and methods designed to deal with different types of spatio-temporal data in R implemented in the R package spacetime, and provides examples for analyzing them. It builds upon the classes and methods for spatial data from package sp, and for time series data from package xts. The goal is to cover a number of useful representations for spatio-temporal sensor data, and results from predicting (spatial and/or temporal interpolation or smoothing), aggregating, or subsetting them, and to represent trajectories. The goals of this paper is to explore how spatio-temporal data can be sensibly represented in classes, and to find out which analysis and visualisation methods are useful and feasible. We discuss the time series convention of representing time intervals by their starting time only. This document is the main reference for the R package spacetime, and is available (in updated form) as a vignette in this package.
In recent years, object-oriented image analysis has been widely adopted by the remote sensing community. Much attention has been given to its application, while the fundamental issue of scale, here characterized by spatial object-definition, seems largely neglected. In the case of vegetation parameters like aboveground biomass and leaf area index (LAI), fundamental objects are individual trees or shrubs, each of which has a specific value. Their spatial extent, however, does not match pixels in size and shape, nor does it fit the requirements of regional studies. Estimation of vegetation parameters consequently demands larger observation units, like vegetation patches, which are better represented by variably shaped objects than by square pixels. This study aims to investigate optimal object definition for biomass and LAI. We have data from 243 field plots in our test site in southern France. They cover a vegetation range from landes to garrigue to maquis, which is considered to be the climax vegetation in the area. A HyMap image covers the area. The image is subjected to a Minimum Noise Fraction (MNF) transformation, after which it is segmented with ten different heterogeneities. The result is ten object sets, each having a different mean object size. These object sets are combined with the original image with the mean band values serving as object attributes. Field observations are linked to the corresponding objects for each object set. Using Ridge regression, relations between field observations and spectral values are identified. The prediction error is determined for each object set by cross validation. The overall lowest prediction error indicates the optimal heterogeneity for segmentation. Results show that the scale of prediction affects prediction accuracy, that increasing the object size yields an optimum in prediction accuracy, and that aboveground biomass and LAI can be associated with different optimal object sizes. Furthermore, it is shown that the accuracy of parameter estimation is higher for object-oriented analysis than for per-pixel analysis.
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