We analyzed data from 79 watersheds in an undegraded U.S. ecoregion to identify key environmental factors that explained stream fish assemblage patterns and to evaluate the relative influence of environmental factors operating at different spatial scales. A few key factors from the watershed, reach, and riparian scale explained a significant amount of the variance in fish attributes. Three environmentfish associations were evident. Top carnivores and intolerant cold-water fishes were associated with relatively narrow, deep, high-gradient, cold streams with strong groundwater inputs. Tolerant cyprinids occurred in small streams with low groundwater input, low dissolved oxygen, and abundant macrophytes. A diverse assemblage (Cyprinidae, Catostomidae, Centrarchidae, Percidae) existed in warm, wide streams in watersheds dominated by lacustrine sand and gravel geology and abundant wetlands and lakes. Overall, reach-scale variables directly explained the most, watershed-scale variables less, and riparian-scale variables the least variation in fish attributes. Watershed and riparian variables had indirect connections with fishes through their direct influence on reach variables. In conjunction with findings from more degraded regions, we conclude that the relative influence of reach-scale variables on fishes are greatest in undegraded areas and that direct effects of watershed-scale variables are increasingly important as human modifications of the landscape increase.
The Scratchpad Virtual Research Environment (http://scratchpads.eu/) is a flexible system for people to create their own research networks supporting natural history science. Here we describe Version 2 of the system characterised by the move to Drupal 7 as the Scratchpad core development framework and timed to coincide with the fifth year of the project’s operation in late January 2012. The development of Scratchpad 2 reflects a combination of technical enhancements that make the project more sustainable, combined with new features intended to make the system more functional and easier to use. A roadmap outlining strategic plans for development of the Scratchpad project over the next two years concludes this article.
We describe an online open repository and analysis platform, BioAcoustica (http://bio.acousti.ca), for recordings of wildlife sounds. Recordings can be annotated using a crowdsourced approach, allowing voice introductions and sections with extraneous noise to be removed from analyses. This system is based on the Scratchpads virtual research environment, the BioVeL portal and the Taverna workflow management tool, which allows for analysis of recordings using a grid computing service. At present the analyses include spectrograms, oscillograms and dominant frequency analysis. Further analyses can be integrated to meet the needs of specific researchers or projects. Researchers can upload and annotate their recordings to supplement traditional publication.Database URL: http://bio.acousti.ca
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