The transcription factor Oct4 plays a key regulatory role in the induction and maintenance of cellular pluripotency. In this article, we show that ubiquitous and multifunctional poly(C) DNA/RNA-binding protein hnRNP-K occupies Oct4 (Pou5f1) enhancers in embryonic stem cells (ESCs) but is dispensable for the initiation, maintenance, and downregulation of Oct4 gene expression. Nevertheless, hnRNP-K has an essential cell-autonomous function in ESCs to maintain their proliferation and viability. To better understand mechanisms of hnRNP-K action in ESCs, we have performed ChIP-seq analysis of genome-wide binding of hnRNP-K and identified several thousands of hnRNP-K target sites that are frequently co-occupied by pluripotencyrelated and common factors (Oct4, TATA-box binding protein, Sox2, Nanog, Otx2, etc.), as well as active histone marks. Furthermore, hnRNP-K localizes exclusively within open chromatin, implying its role in the onset and/or maintenance of this chromatin state.Results of this study showed that the poly(C)-binding protein hnRNP-K occupies in embryonic stem cells (ESCs) both distal and proximal enhancers of the Oct4 gene via CT-rich elements. Genome-wide analysis revealed many colocalizations of hnRNP-K with TATA-box binding protein (TBP), Oct4, Otx2, and active histone marks. Also, comparison of hnRNP-K ChIP-seq data with MNase-seq and ATAC-seq revealed that this protein exclusively targets open chromatin of ESCs.
POUV is a relatively newly emerged class of POU transcription factors present in jawed vertebrates (Gnathostomata). The function of POUV-class proteins is inextricably linked to zygotic genome activation (ZGA). A large body of evidence now extends the role of these proteins to subsequent developmental stages. While some functions resemble those of other POU-class proteins and are related to neuroectoderm development, others have emerged
de novo
. The most notable of the latter functions is pluripotency control by Oct4 in mammals. In this review, we focus on these
de novo
functions in the best-studied species harbouring POUV proteins—zebrafish,
Xenopus
(anamniotes) and mammals (amniotes). Despite the broad diversity of their biological functions in vertebrates, POUV proteins exert a common feature related to their role in safeguarding the undifferentiated state of cells. Here we summarize numerous pieces of evidence for these specific functions of the POUV-class proteins and recap available loss-of-function data.
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