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ObjectiveThe aim of the study was to evaluate the use of proviral DNA as a source of viral genetic material for genotypic coreceptor tropism testing (GTT). MethodsGTT consisted of bulk V3 sequencing followed by geno2pheno interpretation with the interpretative cut-off [false positive rate (FPR)] set at 5 and 10%. GTT was performed for 165 patients with a viral load of 4500 HIV-1 RNA copies/mL on simultaneously collected plasma RNA and proviral DNA, and for 126 patients with a viral load of o500 copies/mL on current proviral DNA and pretreatment plasma RNA. Phenotypic tropism testing (PTT) results were available for 142 samples. ResultsIn the simultaneous RNA/DNA comparison, concordance in prediction was 95.2% (at FPR 10%) and 96.4% (at FPR 5%). Six RNA-R5/DNA-X4 and two RNA-X4/DNA-R5 discordances were observed at an FPR of 10%, and six RNA-R5/DNA-X4 discordances were observed at an FPR of 5%. In the longitudinal RNA/DNA comparison, concordance was 88.1% (at FPR 10%) and 90.5% (at FPR 5%). Eight RNA-X4/DNA-R5 and seven RNA-R5/DNA-X4 discordances were seen at an FPR of 10%, and 10 RNA-R5/DNA-X4 and two RNA-X4/DNA-R5 discordances at an FPR of 5%. The overall concordance of RNA GTT with PTT was 82% (at FPR 10%) and 83% (at FPR 5%). The overall concordance of DNA GTT with PTT was 85% (at both 10 and 5% FPRs). ConclusionsGTT produced highly concordant tropism predictions for proviral DNA and plasma RNA. GTT on proviral DNA offers a promising approach for tropism prediction in clinical practice, particularly for the assessment of treated patients with low or suppressed viraemia.Keywords: chemokine (C-C motif) receptor 5 (CCR5) inhibitors, genotypic tropism testing, HIV-1 coreceptor, HIV-1 proviral DNA Accepted 25 January 2011Introduction Chemokine (C-C motif) receptor 5 (CCR5) antagonists, members of the class of HIV-1 entry inhibitors, selectively inhibit the replication of CCR5-using (R5) viral strains. Before introducing a CCR5 antagonist as a component of antiretroviral therapy (ART), coreceptor usage, or viral tropism, must be determined to exclude the possibility of the presence of chemokine (C-X-C motif) receptor 4 (CXCR4)-using (X4) strains, as these are associated with poor virological response to the drug [1]. The output of the earliest HIV-1 phenotypic tropism testing (PTT) assay was the formation of syncytia in cultured MT2 cells after virus inoculation. This assay is less well suited for use in routine clinical practice because of inherent difficulties with Correspondence: Prof. Chris Verhofstede, AIDS Reference Laboratory, University Hospital, De Pintelaan 185, B-9000 Ghent, Belgium. Tel: 1 32 9 332 51 61; fax: 1 32 9 332 38 41; e-mail: Chris.verhofstede@ugent.be DOI: 10.1111/j.1468-1293.2011.00922.x HIV Medicine (2011 GTT is based on analysis of the V3-loop sequence of the HIV-1 envelope (env) gene using bioinformatic prediction models to deduce coreceptor usage. GTT has the advantage of being less technically demanding, more rapid and less expensive than PTT, thereby meeting today's need for a fast and...

Late presentation for HIV care is a major issue and the cause of higher morbidity, mortality and transmission. In this regard, we analyzed the characteristics of patients presenting for care at our center from January 2006 to July 2017 (n = 687). The majority of the studied population was of African origin (54.3%) with heterosexual women representing the main group (n = 292; 42.5%). 44% of the patients were late presenters (LP) (presenting for care with CD4 T cells <350/mm3 or an AIDS defining event) and 24% were late presenters with advanced disease (LP-AD) (presenting for care with CD4 T cells <200/mm3 or an AIDS defining event). A very high risk of being LP and LP-AD was associated with Sub-Saharan origin (OR 3.4 and 2.6 respectively). Other factors independently associated with LP or LP-AD were age (OR 1.3), male gender (OR 2.0 and 1.5 respectively) and heterosexual route of transmission (OR 2.4 and 2.3 respectively). A significant increase in HIV screening without forgetting those groups would contribute to earlier HIV diagnosis, a key element to end the HIV epidemic. To achieve this goal, addressing the specific hurdles to HIV testing in the migrant population is critical.

The usefulness of a nested PCR assay for detection of Aspergillus sp. DNA was evaluated in 177 bronchoalveolar lavage (BAL) fluid specimens. This test was accurate both to diagnose culture-negative BAL fluid specimens from patients with invasive pulmonary aspergillosis and to confirm culture-positive samples. However, it did not differentiate between infection and colonization.