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Inter-annual variations of phytoplankton abundance and community organization were observed over a two-decade period along with the ancillary parameters at the land-ocean boundary associated with the Sundarban mangrove forest (21°32′ and 22°40′ N and 88°05′ and 89°E), along the NE Coast of the Bay of Bengal. The number of definable Bacillariophyceae species exceeded Dinophyceae taxa, and the total number of bloom-forming species declined from a maximum of ten in 2000 and a minimum of two in 2007. Blooms of the diatom Coscinodiscus radiatus were common in 2000 and 2007. Tide cycles and the onset of the monsoon season played important roles in diurnal and seasonal variability of phytoplankton. Phytoplankton biovolume showed seasonality, with the highest levels during post-monsoon periods and lowest levels during the monsoon period. Phytoplankton abundance was correlated to rainfall patterns, which may be altered by long-term changes in climate.

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Seagrass meadows are among the most important coastal/ marine ecosystems for long-term carbon storage and conditioning of coastal waters. A combined air-water flux of CO2 and CH4 from the seagrass meadows was studied for the first time from Asia’s largest brackish–water lagoon, Chilika, India. Ecosystem-based comparisons were carried out during two hydrologically different conditions of dry and wet seasons in the seagrass dominated southern sector (SS); macrophyte-dominated northern sector (NS); the largely un-vegetated central sector (CS) and the tidally active outer channel (OC) of the lagoon. The mean fluxes of CO2 from SS, NS, CS and OC were 9.8, 146.6, 48.4 and 33.0mM m-2d-1, and that of CH4 were 0.12, 0.11, 0.05 and 0.07mM m-2d-1, respectively. The net emissions (in terms of CO2 equivalents), considering the global warming potential of CO2 (GWP: 1) and CH4 (GWP: 28) from seagrass meadows were over 14 times lower compared to the macrophyte-dominated sector of the lagoon. Contrasting emissivity characteristics of CO2 and CH4 were observed between macrophytes and seagrass, with the former being a persistent source of CO2. It is inferred that although seagrass meadows act as a weak source of CH4, they could be effective sinks of CO2 if land-based pollution sources are minimized.