Evaluating the factors that drive patterns of population differentiation in plants is critical for understanding several biological processes such as local adaptation and incipient speciation. Previous studies have given conflicting results regarding the significance of pollination mode, seed dispersal mode, mating system, growth form and latitudinal region in shaping patterns of genetic structure, as estimated by FST values, and no study to date has tested their relative importance together across a broad scale. Here, we assembled a 337‐species data set for seed plants from publications with data on FST from nuclear markers and species traits, including variables pertaining to the sampling scheme of each study. We used species traits, while accounting for sampling variables, to perform phylogenetic multiple regressions. Results demonstrated that FST values were higher for tropical, mixed‐mating, non‐woody species pollinated by small insects, indicating greater population differentiation, and lower for temperate, outcrossing trees pollinated by wind. Among the factors we tested, latitudinal region explained the largest portion of variance, followed by pollination mode, mating system and growth form, while seed dispersal mode did not significantly relate to FST. Our analyses provide the most robust and comprehensive evaluation to date of the main ecological factors predicted to drive population differentiation in seed plants, with important implications for understanding the basis of their genetic divergence. Our study supports previous findings showing greater population differentiation in tropical regions and is the first that we are aware of to robustly demonstrate greater population differentiation in species pollinated by small insects.

The circadian clock is a transcriptional/translational feedback loop that drives the rhythmic expression of downstream mRNAs. Termed “clock-controlled genes,” these molecular outputs of the circadian clock orchestrate cellular, metabolic, and behavioral rhythms. As part of our on-going work to characterize key upstream regulators of circadian mRNA expression, we have identified a novel clock-controlled gene in Drosophila melanogaster, Achilles (Achl), which is rhythmic at the mRNA level in the brain and which represses expression of anti-microbial peptides in the immune system. Achilles knock-down in neurons dramatically elevates expression of crucial immune response genes, including IM1 (Immune induced molecule 1), Mtk (Metchnikowin), and Drs (Drosomysin). As a result, flies with knocked-down Achilles expression are resistant to bacterial challenges. Meanwhile, no significant change in core clock gene expression and locomotor activity is observed, suggesting that Achilles influences rhythmic mRNA outputs rather than directly regulating the core timekeeping mechanism. Notably, Achilles knock-down in the absence of immune challenge significantly diminishes the fly’s overall lifespan, indicating a behavioral or metabolic cost of constitutively activating this pathway. Together, our data demonstrate that (1) Achilles is a novel clock-controlled gene that (2) regulates the immune system, and (3) participates in signaling from neurons to immunological tissues.

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Animal pollinators directly affect plant gene flow by transferring pollen grains between individuals. Pollinators with restricted mobility are predicted to limit gene flow within and among populations, whereas pollinators that fly longer distances are likely to promote genetic cohesion. These predictions, however, remain poorly tested. We examined population genetic structure and fine‐scale spatial genetic structure (FSGS) in six perennial understory angiosperms in Andean cloud forests of northwestern Ecuador. Species belong to three families (Gesneriaceae, Melastomataceae, and Rubiaceae), and within each family we paired one insect‐pollinated with one hummingbird‐pollinated species, predicting that insect‐pollinated species have greater population differentiation (as quantified with the FST statistic) and stronger FSGS (as quantified with the SP statistic) than hummingbird‐pollinated species. We confirmed putative pollinators through a literature review and fieldwork, and inferred population genetic parameters with a genome‐wide genotyping approach. In two of the three species pairs, insect‐pollinated species had much greater (>2‐fold) population‐level genetic differentiation and correspondingly steeper declines in fine‐scale genetic relatedness. In the Gesneriaceae pair, however, FST and SP values were similar between species and to those of the other hummingbird‐pollinated plants. In this pair, the insect pollinators are euglossine bees (as opposed to small bees and flies in the other pairs), which are thought to forage over large areas, and therefore may provide similar levels of gene flow as hummingbirds. Overall, our results shed light on how different animal pollination modes influence the spatial scale of plant gene flow, suggesting that small insects strongly decrease genetic cohesion.

Arabidopsis thaliana has a wide elevational range and much of its diversity may be associated with local adaptation to elevation. We took a multi-regional view of the genomics and physiology of elevational adaptation in Arabidopsis, with >200 ecotypes, including 17 newly collected from Africa. We measured plant responses to potential high elevation stressors: low pCO2, high light, and night freezing and conducted genome-wide association studies (GWAS). We found evidence of an adaptive cline in the western Mediterranean with low δ13C/early flowering at low elevations to high δ13C/late flowering at high elevations. By contrast, central Asian high elevation ecotypes flowered earlier. Antioxidants and pigmentation under high light and freezing showed regional differentiation but not elevational clines and may be associated with maladaptive plasticity. We found natural variation in non-photochemical quenching (NPQ) kinetics in response to chilling and fluctuating light, though with an unclear role in local adaptation. There were several candidate genetic loci mapped, including the ascorbate transporter PHT4;4 (associated with antioxidants) that influences the xanthophyll cycle, and may be involved in local adaptation to Morocco. Our study shows how the ecological strategies and genetic loci causing local adaptation to elevation change across regions and contribute to diversity in Arabidopsis.

AIM: The role of environmental conditions in limiting species distributions is often hypothesized, but it is challenging to gather large-scale data to demonstrate environmental impacts on individual performance. The past and present biogeography of model organisms is key context to understanding how environment shapes species' genetic and phenotypic diversity. LOCATION: Global. TAXON: Arabidopsis thaliana ("Arabidopsis"). METHODS: We fit occurrence records to climate data, and then projected the distribution of Arabidopsis under last glacial maximum, current, and future climates. We confronted model predictions with individual performance measured on 2,194 herbarium specimens, and we asked whether predicted suitability was associated with life-history variation measured on 898 natural accessions. RESULTS: The most important climate variables constraining the Arabidopsis distribution were winter cold in northern and high elevation regions and summer heat in southern regions. Herbarium specimens from regions with lower habitat suitability in both northern and southern regions were smaller, supporting the hypothesis that the distribution of Arabidopsis is constrained by climate-associated factors. Climate anomalies partly explained interannual variation in herbarium specimen size, but these did not closely correspond to local limiting factors identified in the distribution model. Late-flowering genotypes were absent from the lowest suitability regions, suggesting slower life histories are only viable closer to the center of the realized niche. We identified glacial refugia farther north than previously recognized, as well as refugia concordant with previous population genetic findings. Lower latitude populations, known to be genetically distinct, are most threatened by future climate change. The recently colonized range of Arabidopsis was well-predicted by our native-range model applied to certain regions but not others, suggesting it has colonized novel climates. MAIN CONCLUSIONS: Integration of distribution models with performance data from vast natural history collections is a route forward for testing hypotheses about species distributions and their relationship with evolutionary fitness across large scales.

Examining dispersal is critical for understanding the diversity of Andean-centered plant lineages, like Burmeistera (Campanulaceae). One-third of its species present an unusual inflated berry. Unlike the bright colors of non-inflated fruits in the genus, these fruits are typically dull-green; however, the fact that the seeds are loosely held in the placenta and easily removed when touched seems to suggest adaptation to animal dispersal. We studied two inflated-baccate species, Burmeistera glabrata and B. borjensis, with the aim of testing the non-exclusive hypotheses that their seeds are dispersed by (1) small mammals, (2) slugs, or (3) adult flies that develop inside the fruits. In two sites in the Ecuadorian Andes, we performed observations at dusk and dawn to examine the fate of fruits and seeds; recording fruit fall, formation of holes in the fruits, and seed loss from the placenta. We documented fruit visitors with cameras, and surveyed unopened fruits for the presence of insect larvae and seed condition. Finally, we performed an experiment to examine the effect of holes and rain in germination, in order to evaluate if holes are required for seeds to leave the fruits and subsequently germinate. For both species, most fruits fell and decomposed beneath the mother plant. However, we found limited support for small mammal dispersal; videos and observations revealed that mice and squirrels are potential, but rare, seed dispersers. We found no evidence for slug or fly dispersal; fly larvae were common inside fruits, but acted exclusively as seed predators. Crickets often chewed holes in fruits on plants and on the ground. Holes did not have an effect on germination, which was induced only by rain. Hence, the majority of seeds end up under the mother plant, with rare but potentially important events of primary or secondary dispersal by small mammals. The combination of limited dispersal due to gravity and rare events of mammal dispersal may have played a critical role in the rapid diversification of Burmeistera.

Miconia indicoviolacea is described from the western slopes of the western cordillera in the Chocó biogeographic region of Colombia, illustrated, and compared with superficially similar species that are also endemic to the country. It is readily recognized by its prevailingly purple to dark blue inflorescence branches, peduncles, and internodes, minute glandular-puberulent vegetative and hypanthial indumentum, caudate foliar apex, dorsally inclined anther pores, glabrous rounded to truncate dorso-basal staminal appendages, and seeds with a conspicuous appendage at the chalazal end and a raphal zone that is approximately double the size of the seed corpus. ResumenMiconia indicoviolacea es una especie descrita de la vertiente occidental de la cordillera Occidental en la región del Chocó biogeográfico de Colombia, es ilustrada y comparada con especies superficialmente similares y también endémicas para el país. Se reconoce fácilmente por sus pedúnculos y ramas de la inflorescencia de color morado a azul oscuro, indumento diminutamente glandular-puberulento en órganos vegetativos e hipanto, ápice foliar caudado, poros de las anteras dorsalmente inclinados, apéndices estaminales glabros y redondeados a truncados dorso-basalmente, y semillas con un apéndice conspicuo en el extremo calazal y una zona rafal que es aproximadamente el doble del tamaño del cuerpo de la semilla.