Data deduplication is an essential and critical component of backup systems. Essential, because it reduces storage space requirements, and critical, because the performance of the entire backup operation depends on its throughput. Traditional backup workloads consist of large data streams with high locality, which existing deduplication techniques require to provide reasonable throughput.We present Extreme Binning, a scalable deduplication technique for non-traditional backup workloads that are made up of individual files with no locality among consecutive files in a given window of time. Due to lack of locality, existing techniques perform poorly on these workloads. Extreme Binning exploits file similarity instead of locality, and makes only one disk access for chunk lookup per file, which gives reasonable throughput. Multi-node backup systems built with Extreme Binning scale gracefully with the amount of input data; more backup nodes can be added to boost throughput. Each file is allocated using a stateless routing algorithm to only one node, allowing for maximum parallelization, and each backup node is autonomous with no dependency across nodes, making data management tasks robust with low overhead.
We present an annotation management system for relational databases. In this system, every piece of data in a relation is assumed to have zero or more annotations associated with it and annotations are propagated along, from the source to the output, as data is being transformed through a query. Such an annotation management system is important for understanding the provenance and quality of data, especially in applications that deal with integration of scientific and biological data.We present an extension, pSQL, of a fragment of SQL that has three different types of annotation propagation schemes, each useful for different purposes. The default scheme propagates annotations according to where data is copied from. The default-all scheme propagates annotations according to where data is copied from among all equivalent formulations of a given query. The custom scheme allows a user to specify how annotations should propagate. We present a storage scheme for the annotations and describe algorithms for translating a pSQL query under each propagation scheme into one or more SQL queries that would correctly retrieve the relevant annotations according to the specified propagation scheme. For the default-all scheme, we also show how we generate finitely many queries that can simulate the annotation propagation behavior of the set of all equivalent queries, which is possibly infinite. The algorithms are implemented and the feasibility of the system is demonstrated by a set of experiments that we have conducted.
Inter-file compression techniques store files as sets of references to data objects or chunks that can be shared among many files. While these techniques can achieve much better compression ratios than conventional intra-file compression methods such as Lempel-Ziv compression, they also reduce the reliability of the storage system because the loss of a few critical chunks can lead to the loss of many files. We show how to eliminate this problem by choosing for each chunk a replication level that is a function of the amount of data that would be lost if that chunk were lost. Experiments using actual archival data show that our technique can achieve significantly higher robustness than a conventional approach combining data mirroring and intra-file compression while requiring about half the storage space.
We present an annotation management system for relational databases. In this system, every piece of data in a relation is assumed to have zero or more annotations associated with it and annotations are propagated along, from the source to the output, as data is being transformed through a query. Such an annotation management system is important for understanding the provenance and quality of data, especially in applications that deal with integration of scientific and biological data.We present an extension, pSQL, of a fragment of SQL that has three different types of annotation propagation schemes, each useful for different purposes. The default scheme propagates annotations according to where data is copied from. The default-all scheme propagates annotations according to where data is copied from among all equivalent formulations of a given query. The custom scheme allows a user to specify how annotations should propagate. We present a storage scheme for the annotations and describe algorithms for translating a pSQL query under each propagation scheme into one or more SQL queries that would correctly retrieve the relevant annotations according to the specified propagation scheme. For the default-all scheme, we also show how we generate finitely many queries that can simulate the annotation propagation behavior of the set of all equivalent queries, which is possibly infinite. The algorithms are implemented and the feasibility of the system is demonstrated by a set of experiments that we have conducted.
Data science has become prevalent in a large variety of domains. Inherent in its practice is an exploratory, probing, and fact finding journey, which consists of the assembly, adaptation, and execution of complex data science pipelines. The trustworthiness of the results of such pipelines rests entirely on their ability to be reproduced with fidelity, which is difficult if pipelines are not documented or recorded minutely and consistently. This difficulty has led to a reproducibility crisis and presents a major obstacle to the safe adoption of the pipeline results in production environments. The crisis can be resolved if the provenance for each data science pipeline is captured transparently as pipelines are executed. However, due to the complexity of modern data science pipelines, transparently capturing sufficient provenance to allow for reproducibility is challenging. As a result, most existing systems require users to augment their code or use specific tools to capture provenance, which hinders productivity and results in a lack of adoption. In this paper, we present Ursprung, 1 a transparent provenance collection system designed for data science environments. 2 The Ursprung philosophy is to capture provenance and build lineage by integrating with the execution environment to automatically track static and runtime configuration parameters of data science pipelines. Rather than requiring data scientists to make changes to their code, Ursprung records basic provenance information from system-level sources and combines it with provenance from application-level sources (e.g., log files, stdout), which can be accessed and recorded through a domain-specific language. In our evaluation, we show that Ursprung is able to capture sufficient provenance for a variety of use cases and only adds an overhead of up to 4%.
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