We present a new implementation of the numerical integration of the classical, gravitational, N-body problem based on a high order Hermite's integration scheme with block time steps, with a direct evaluation of the particle-particle forces. The main innovation of this code (called HiGPUs) is its full parallelization, exploiting both OpenMP and MPI in the use of the multicore Central Processing Units as well as either Compute Unified Device Architecture (CUDA) or OpenCL for the hosted Graphic Processing Units. We tested both performance and accuracy of the code using up to 256 GPUs in the supercomputer IBM iDataPlex DX360M3 Linux Infiniband Cluster provided by the Italian supercomputing consortium CINECA, for values of N <= 8 millions. We were able to follow the evolution of a system of 8 million bodies for few crossing times, task previously unreached by direct summation codes. (c) 2012 Elsevier Inc. All rights reserved
Upcoming H I surveys will deliver large datasets, and automated processing using the full 3-D information (two positional dimensions and one spectral dimension) to find and characterize H I objects is imperative. In this context, visualization is an essential tool for enabling qualitative and quantitative human control on an automated source finding and analysis pipeline. We discuss how Visual Analytics, the combination of automated data processing and human reasoning, creativity and intuition, supported by interactive visualization, enables flexible and fast interaction with the 3-D data, helping the astronomer to deal with the analysis of complex sources. 3-D visualization, coupled to modeling, provides additional capabilities helping the discovery and analysis of subtle structures in the 3-D domain. The requirements for a fully interactive visualization tool are: coupled 1-D/2-D/3-D visualization, quantitative and comparative capabilities, combined with supervised semi-automated analysis. Moreover, the source code must have the following characteristics for enabling collaborative work: open, modular, well documented, and well maintained. We review four state of-the-art, 3-D visualization packages assessing their capabilities and feasibility for use in the case of 3-D astronomical data.
The National Cancer Institute (NCI) Cancer Research Data Commons (CRDC) aims to establish a national cloudbased data science infrastructure. Imaging Data Commons (IDC) is a new component of CRDC supported by the Cancer Moonshot™. The goal of IDC is to enable a broad spectrum of cancer researchers, with and without imaging expertise, to easily access and explore the value of de-identified imaging data and to support integrated analyses with non-imaging data. We achieve this goal by co-locating versatile imaging collections with cloudbased computing resources and data exploration, visualization, and analysis tools. The IDC pilot was released in October 2020 and is being continuously populated with radiology and histopathology collections. IDC provides access to curated imaging collections, accompanied by documentation, a user forum, and a growing number of analysis use cases that aim to demonstrate the value of a data commons framework applied to cancer imaging research.Significance: This study introduces NCI Imaging Data Commons, a new repository of the NCI Cancer Research Data Commons, which will support cancer imaging research on the cloud.
SKA precursors are capable of detecting hundreds of galaxies in H I in a single 12 hours pointing. In deeper surveys one will probe more easily faint H I structures, typically located in the vicinity of galaxies, such as tails, filaments, and extraplanar gas. The importance of interactive visualization in data exploration has been demonstrated by the wide use of tools (e.g. Karma, Casaviewer, VISIONS) that help users to receive immediate feedback when manipulating the data. We have developed SlicerAstro, a 3-D interactive viewer with new analysis capabilities, based on traditional 2-D input/output hardware. These capabilities enhance the data inspection, allowing faster analysis of complex sources than with traditional tools. SlicerAstro is an open-source extension of 3DSlicer, a multi-platform open source software package for visualization and medical image processing.We demonstrate the capabilities of the current stable binary release of SlicerAstro, which offers the following features: i) handling of FITS files and astronomical coordinate systems; ii) coupled 2-D/3-D visualization; iii) interactive filtering; iv) interactive 3-D masking; v) and interactive 3-D modeling. In addition, SlicerAstro has been designed with a strong, stable and modular C ++ core, and its classes are also accessible via Python scripting, allowing great flexibility for user-customized visualization and analysis tasks.
We show the effects of the perturbation caused by a passing by star on the Kuiper belt objects (KBOs) of our Solar System. The dynamics of the Kuiper belt (KB) is followed by direct N -body simulations. The sampling of the KB has been done with N up to 131, 062, setting the KBOs on initially nearly circular orbits distributed in a ring of surface density Σ ∼ r −2 . This modelization allowed us to investigate the secular evolution of the KB upon the encounter with the perturbing star. Actually, the encounter itself usually leads toward eccentricity and inclination distributions similar to observed ones, but tends also to excite the low-eccentricity population (e < ∼ 0.1 around a ∼ 40 AU from the Sun), depleting this region of low eccentricities. The following long-term evolution shows a "cooling" of the eccentricities repopulating the low-eccentricity area. In dependence on the assumed KBO mass spectrum and sampled number of bodies, this repopulation takes place in a time that goes from 0.5 Myr to 100 Myr. Due to the unavoidable limitation in the number of objects in our longterm simulations (N 16384), we could not consider a detailed KBO mass spectrum, accounting for low mass objects, thus our present simulations are not reliable in constraining correlations among inclination distribution of the KBOs and other properties, such as their size distribution. However, our high precision long term simulations are a starting point for future larger studies on massively parallel computational platforms which will provide a deeper investigation of the secular evolution (∼ 100 Myr) of the KB over its whole mass spectrum.
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