The maintenance or restoration of natural flow regimes has been proposed as one means of conserving native fishes. Native fish conservation is enhanced either through the restoration of natural fluvial geomorphic processes (and thus the maintenance of essential habitats) or by the suppression of nonnative fishes. The San Juan River of Colorado, New Mexico, and Utah was dammed in 1962 and its natural flow regime was lost. Beginning in 1993, the river was regulated to mimic a natural flow regime by increasing reservoir releases to mimic timing, but only partially to mimic amplitude, volume, and duration of spring snowmelt discharge. We evaluated the responses of native and nonnative fishes to this natural flow regime mimicry by comparing their autumn densities (number/m2) in San Juan River secondary channels to those during spring runoff and summer base flow over a 9‐year period. Densities of native speckled dace Rhinichthys osculus, bluehead sucker Catostomus discobolus, and flannelmouth sucker C. latipinnis increased with elevated spring discharge. Total native fish density was 10 times greater in 1993 (the year of highest spring discharge) than in 2000 (the year of lowest spring discharge). Collectively, nonnative fish density was negatively related to spring discharge, but western mosquitofish Gambusia affinis was the only commonly collected nonnative that had a significant relationship. Mean daily summer discharge did not affect the density of native or nonnative fishes. Nonnative fishes, however, responded positively to sustained low summer flows (days discharge was less than 14 m3/s). Densities of red shiner Cyprinella lutrensis, common carp Cyprinus carpio, and western mosquitofish were four or more times greater in 2000 (a year of sustained low summer discharge) than in years with comparatively high summer discharge. Speckled dace was the only native species negatively affected by extended low summer discharge. Our results suggest that manipulating spring discharge to mimic a natural flow regime enhances native fish recruitment but might have limited effect in suppressing nonnative fishes, particularly fecund, rapidly growing, small‐bodied species.

Escalating demands for water have led to substantial modifications of river systems in arid regions, which coupled with the widespread invasion of nonnative organisms, have increased the vulnerability of native aquatic species to extirpation. Whereas a number of studies have evaluated the role of modified flow regimes and nonnative species on native aquatic assemblages, few have been conducted where the compounding effects of modified flow regimes and established nonnatives do not confound interpretations, particularly at spatial and temporal scales that are relevant to conservation of species at a range-wide level. By evaluating a 19-year data set across six sites in the relatively unaltered upper Gila River basin, New Mexico, USA, we tested how natural flow regimes and presence of nonnative species affected long-term stability of native fish assemblages. Overall, we found that native fish density was greatest during a wet period at the beginning of our study and declined during a dry period near the end of the study. Nonnative fishes, particularly predators, generally responded in opposite directions to these climatic cycles. Our data suggested that chronic presence of nonnative fishes, coupled with naturally low flows reduced abundance of individual species and compromised persistence of native fish assemblages. We also found that a natural flow regime alone was unlikely to ensure persistence of native fish assemblages. Rather, active management that maintains natural flow regimes while concurrently suppressing or excluding nonnative fishes from remaining native fish strongholds is critical to conservation of native fish assemblages in a system, such as the upper Gila River drainage, with comparatively little anthropogenic modification.

Nonnative fishes and flow alteration are primary threats to native fish persistence in lotic systems. We used several flow regime attributes and fish sampling data obtained from the San Juan River, New Mexico and Utah, during 1993–2010 to evaluate the potential use of flow manipulations to increase recruitment of native fishes that must cope with nonnative species. During this period, discharge in the river was partially manipulated by reservoir releases that augmented naturally high spring flows in this snowmelt‐driven system. An information theoretic approach was used to rank candidate models that predicted species densities based upon selected combinations of flow attributes and abundances of nonnative species. Autumn density of age‐0 fishes in secondary channels was the main response variable. The main predictor variables included flow attributes associated with interannual variation in daily discharge and water temperature; densities of nonnative competitors; and catch rates of a numerically dominant nonnative predator (the channel catfish Ictalurus punctatus). Top‐ranked models for native species included positive associations with small‐bodied nonnative fishes and negative associations with the abundance of channel catfish adults. Densities of native speckled dace Rhinichthys osculus and flannelmouth suckers Catostomus latipinnis increased with mean spring discharge, but the density of native bluehead suckers C. discobolus did not. With the exception of juvenile channel catfish, the top candidate models predicting densities of nonnative fishes all included the duration of low summer flows. These results confirmed findings from a previous study that demonstrated different responses of native and nonnative fishes to seasonal flows; the present study also revealed that densities of all fishes were generally lower in years with greater abundance of adult channel catfish. Regression analysis indicated that seasonal flow manipulations and suppression of nonnative predator populations could be effective management tools to restore and maintain the native fish community.

Pilger TJ, Gido KB, Propst DL. Diet and trophic niche overlap of native and nonnative fishes in the Gila River, USA: implications for native fish conservation. Ecology of Freshwater Fish 2010: 19: 300–321. © 2010 John Wiley & Sons A/S Abstract –  The upper Gila River basin is one of the few unimpounded drainage basins west of the Continental Divide, and as such is a stronghold for endemic fishes in the region. Nevertheless, multiple nonindigenous fishes potentially threaten the persistence of native fishes, and little is known of the trophic ecology of either native or nonnative fishes in this system. Gut contents and stable isotopes (13C and 15N) were used to identify trophic relationships, trophic niche overlap and evaluate potential interactions among native and nonnative fishes. Both native and nonnative fishes fed across multiple trophic levels. In general, adult native suckers had lower 15N signatures and consumed more algae and detritus than smaller native fish, including juvenile suckers. Adult nonnative smallmouth bass (Micropterus dolomieu), yellow bullhead (Ameiurus natalis) and two species of trout preyed on small‐bodied fishes and predaceous aquatic invertebrates leading to significantly higher trophic positions than small and large‐bodied native fishes. Thus, the presence of these nonnative fishes extended community food‐chain lengths by foraging at higher trophic levels. Although predation on juvenile native fishes might threaten persistence of native fishes, the high degree of omnivory suggests that impacts of nonnative predators may be lessened and dependent on environmental variability.

Dendritic ecological network (DEN) architecture can be a strong predictor of spatial genetic patterns in theoretical and simulation studies. Yet, interspecific differences in dispersal capabilities and distribution within the network may equally affect species' genetic structuring. We characterized patterns of genetic variation from up to ten microsatellite loci for nine numerically dominant members of the upper Gila River fish community, New Mexico, USA. Using comparative landscape genetics, we evaluated the role of network architecture for structuring populations within species (pairwise F ) while explicitly accounting for intraspecific demographic influences on effective population size (N ). Five species exhibited patterns of connectivity and/or genetic diversity gradients that were predicted by network structure. These species were generally considered to be small-bodied or habitat specialists. Spatial variation of N was a strong predictor of pairwise F for two species, suggesting patterns of connectivity may also be influenced by genetic drift independent of network properties. Finally, two study species exhibited genetic patterns that were unexplained by network properties and appeared to be related to nonequilibrium processes. Properties of DENs shape community-wide genetic structure but effects are modified by intrinsic traits and nonequilibrium processes. Further theoretical development of the DEN framework should account for such cases.