Farming was first introduced to Europe in the mid-7th millennium BCE–associated with migrants from Anatolia who settled in the Southeast before spreading throughout Europe. To understand the dynamics of this process, we analyzed genome-wide ancient DNA data from 225 individuals who lived in southeastern Europe and surrounding regions between 12,000 and 500 BCE. We document a West-East cline of ancestry in indigenous hunter-gatherers and–in far-eastern Europe–early stages in the formation of Bronze Age Steppe ancestry. We show that the first farmers of northern and western Europe passed through southeastern Europe with limited hunter-gatherer admixture, but that some groups that remained mixed extensively, without the male-biased hunter-gatherer admixture that prevailed later in the North and West. Southeastern Europe continued to be a nexus between East and West, with intermittent genetic contact with the Steppe up to 2000 years before the migrations that replaced much of northern Europe’s population.

Farming was first introduced to southeastern Europe in the mid-7th millennium BCE – brought by migrants from Anatolia who settled in the region before spreading throughout Europe. To clarify the dynamics of the interaction between the first farmers and indigenous hunter-gatherers where they first met, we analyze genome-wide ancient DNA data from 223 individuals who lived in southeastern Europe and surrounding regions between 12,000 and 500 BCE. We document previously uncharacterized genetic structure, showing a West-East cline of ancestry in hunter-gatherers, and show that some Aegean farmers had ancestry from a different lineage than the northwestern Anatolian lineage that formed the overwhelming ancestry of other European farmers. We show that the first farmers of northern and western Europe passed through southeastern Europe with limited admixture with local hunter-gatherers, but that some groups mixed extensively, with relatively sex-balanced admixture compared to the male-biased hunter-gatherer admixture that prevailed later in the North and West. Southeastern Europe continued to be a nexus between East and West after farming arrived, with intermittent genetic contact from the Steppe up to 2,000 years before the migration that replaced much of northern Europe’s population.

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A group of Copper Age shaft‐hole axes from Caput Adriae (northeastern Italy, western Slovenia and northwestern Croatia) manufactured using meta‐dolerite have been analysed for major and trace elements. All the samples show magmatic textures and well recognizable relicts of primary mineralogical phases. Petrographic observations suggest an ophiolitic provenance of the protolithic source(s) while geochemical data indicate that the original magmas originated in a fore arc or pre arc tectonic setting. Strong similarity has been found with several lithotypes from the Banija Ophiolite Complex (Croatia), here indicated as the most probable source area. Considering the available archaeometric data about shaft‐hole axes found in northern Italy and Caput Adriae in comparison to those of axe blades discovered in the same area, it emerges that there is a utilization of different rock types, the source of which appears to be quite close to the discovery sites. In the investigated area the shaft‐hole axes are largely made from ophiolitic‐related rocks which are associated with copper deposits. Consequently there may have been a relation between the localization of the geological sources of shaft‐hole axes and the development of metallurgical activities.

Abstract