Habitat complexity is one of the most important factors structuring biotic assemblages, yet we still lack basic understanding of the underlying mechanisms. Although it is one of the primary targets in conservation management, no methods are available for comparing complexity across ecosystems, and system-specific qualitative assessment predominates. Despite its overwhelming importance for faunal diversity and abundance, there has been surprisingly little interest in examining its effects on other community and ecosystem attributes. We discuss possibilities of such effects, outlining potentially fruitful areas for future research, and argue that complexity may be implicated in community persistence and ecosystem stability by acting as a decoupling mechanism in predator-prey interactions. We provide a brief overview of methods used to quantify complexity in different ecosystems, highlighting contributions of the current issue of Hydrobiologia, and discuss potential application of these approaches for cross-ecosystem comparisons. Better understanding of the role of habitat complexity resulting from such comparisons is critically important for preservation of biodiversity and ecosystem function in an era of unprecedented habitat loss.

We investigated the role of freshwater macrophytes as refuge by testing the hypothesis that predators capture fewer prey in more dense and structurally complex habitats. We also tested the hypothesis that habitat structure not only affects the prey-capture success of a single predator in isolation, but also the effectiveness of two predators combined, particularly if it mediates interactions between the predators. We conducted a fully crossed four-factorial laboratory experiment using artificial plants to determine the separate quantitative (density) and qualitative (shape) components of macrophyte structure on the prey-capture success of a predatory damselfly, Ischnura heterosticta tasmanica, and the southern pygmy perch, Nannoperca australis. Contrary to our expectations, macrophyte density had no effect on the prey-capture success of either predator, but both predators were significantly less effective in the structurally complex Myriophyllum analogue than in the structurally simpler Triglochin and Eleocharis analogues. Furthermore, the greater structural complexity of Myriophyllum amplified the impact of the negative interaction between the predators on prey numbers; the habitat use by damselfly larvae in response to the presence of southern pygmy perch meant they captured less prey in Myriophyllum. These results demonstrate habitat structure can influence multiple predator effects, and support the mechanism of increased prey refuge in more structurally complex macrophytes.

A considerable amount of research has investigated the influence of habitat structure on predator success, yet few studies have explored the implications for community structure and food-web dynamics. The relative importance of macrophyte structure and fish predation on the composition of the macroinvertebrate and periphyton communities in a lowland river was investigated using a multifactorial caging experiment. We hypothesised that: (1) fish predators are less effective in a more structurally complex macrophyte analogue; (2) strong direct and indirect effects of fish predators (e.g. trophic cascades) are less likely to occur in a structurally complex habitat; and (3) the strength of these patterns is influenced by the composition of the prevailing community assemblage. We measured the abundance and composition of the macroinvertebrate and periphyton communities associated with three different-shaped macrophyte analogues, under different fish predator treatments and at different times. Macrophyte analogue architecture had strong, consistent effects on both the macroinvertebrate and periphyton communities; both were most abundant and diverse on the most structurally complex plant analogue. In contrast, the fish predators affected only a subset of the macroinvertebrate community and there was a suggestion of minor indirect effects on periphyton community composition. Contrary to expectations, the fish predators had their strongest effects in the most structurally complex macrophyte analogue. We conclude that in this system, macrophyte shape strongly regulates the associated freshwater assemblage, resulting in a diverse community structure less likely to exhibit strong effects of fish predation.

Providing flows for biota and environmental processes is a challenging water management issue. For society the ability and willingness to allocate water to sustain the environment is increasingly competitive due to escalating demand and as a consequence of climate change. In response, an array of environmental flow (E-flow) methods have developed. Our view is that few E-flows have been implemented and even fewer evaluated in a research and management context. Much of our science effort in E-flows has been directed primarily at method development, with less attention being given to monitoring, evaluation and subsequent revision of E-flow strategies. Our objectives are to highlight the lack of connection between current trends in E-flow literature and theory with assessment of the efficacy and practical application of these methods. Specifically, effective E-flows need to be explicit about flow-ecology relationships to adequately determine the amount and timing of water required. We briefly outline the historical development of E-flows and discuss how serial development of methods and techniques has restricted implementation, evaluation and revision. We highlight areas where methods are lacking, such as incorporation of data on flow-ecology relationships into operational use of E-flow methods. We suggest four initial steps that will improve the applicability, implementation and ultimate success of E-flows.

Habitat complexity is often used to explain the distribution of species in environments, yet the ability to predict outcomes of structural differences between habitats remains elusive. This stems from the difficulty and lack of consistency in measuring and quantifying habitat structure, making comparison between different habitats and systems problematic. For any measure of habitat structure to be useful it needs to be applicable to a range of habitats and have relevance to their associated fauna. We measured three differently-shaped macrophyte analogues with nine indices of habitat structure to determine which would best distinguish between their shape and relate to the abundance and rarefied species richness of their associated macroinvertebrate assemblages. These indices included the physical, whole-plant attributes of surface area (SA) and plant volume (PV), the interstitial space attributes of average space size and frequency (ISI), average refuge space from predation (Sp/Pr), and total refuge space (FFV), and the degree of surface convolution at a range of scales (i.e. the fractal dimension at four spatial scales: 7.5), 5), 2.5) and 1 )magnification). We found a high degree of intercorrelation between the structural indices such that they could be organised into two suites: one group describing interstitial space and surface convolution at coarse scales, the other describing whole-plant attributes and surface convolution at fine scales. Two of these indices fell into both suites: the average refuge space from predation (Sp/Pr) and the fractal dimension at 5)magnification. These two measures were also strongly related to macroinvertebrate abundance and rarefied species richness, which points to their usefulness in quantifying habitat structure and illustrates that habitat structure depends not just on shape, but on the space associated with shape.

SUMMARY1. Northern Australia is characterised by a tropical wet-dry climate that regulates the distinctive character of river flow regimes across the region. There is marked hydrological seasonality, with most flow occurring over only a few months of the year during the wet season. Flow is also characterised by high variability between years, and in the degree of flow cessation, or intermittency, over the dry season. 2. At present, the relatively low human population density and demand for water in the region means that most rivers have largely unmodified flow regimes. These rivers therefore provide a good opportunity to understand the role of natural flow variability in river ecosystem structure and processes. 3. This review describes the major flow regime classes characterising northern Australian rivers, from perennial to seasonally intermittent to extremely intermittent, and how these regimes give rise to marked differences in the ecological character of these tropical rivers, particularly their floodplains. 4. We describe the key features of these flow regimes, namely the wet and dry seasons and the transitions between these seasons, and how they regulate the biophysical heterogeneity, primary productivity and movement of biota in Australia's wet-dry tropical rivers. 5. We develop a conceptual model that predicts the likely hydrological and ecological consequences of future increases in water abstraction (e.g. for agriculture), and suggest how such impacts can be managed so that the distinctive ecological character of these rivers is maintained.

Summary1. Despite implications for top-down and bottom-up control and the stability of food webs, understanding the links between consumers and their diets remains difficult, particularly in remote tropical locations where food resources are usually abundant and variable and seasonal hydrology produces alternating patterns of connectivity and isolation. 2. We used a large scale survey of freshwater biota from 67 sites in three catchments (Daly River, Northern Territory; Fitzroy River, Western Australia; and the Mitchell River, Queensland) in Australia's wet-dry tropics and analysed stable isotopes of carbon (d 13 C) to search for broad patterns in resource use by consumers in conjunction with known and measured indices of connectivity, the duration of floodplain inundation, and dietary choices (i.e. stomach contents of fish). 3. Regression analysis of biofilm d 13 C against consumer d 13 C, as an indicator of reliance on local food sources (periphyton and detritus), varied depending on taxa and catchment. 4. The carbon isotope ratios of benthic invertebrates were tightly coupled to those of biofilm in all three catchments, suggesting assimilation of local resources by these largely nonmobile taxa. 5. Stable C isotope ratios of fish, however, were less well-linked to those of biofilm and varied by catchment according to hydrological connectivity; the perennially flowing Daly River with a long duration of floodplain inundation showed the least degree of coupling, the seasonally flowing Fitzroy River with an extremely short flood period showed the strongest coupling, and the Mitchell River was intermediate in connectivity, flood duration and consumer-resource coupling. 6. These findings highlight the high mobility of the fish community in these rivers, and how hydrological connectivity between habitats drives patterns of consumer-resource coupling.

Biotic communities are shaped by adaptations from generations of exposure to selective pressures by recurrent and often infrequent events. In large rivers, floods can act as significant agents of change, causing considerable physical and biotic disturbance while often enhancing productivity and diversity. We show that the relative balance between these seemingly divergent outcomes can be explained by the rhythmicity, or predictability of the timing and magnitude, of flood events. By analyzing biological data for large rivers that span a gradient of rhythmicity in the Neotropics and tropical Australia, we find that systems with rhythmic annual floods have higher-fish species richness, more stable avian populations, and elevated rates of riparian forest production compared with those with arrhythmic flood pulses. Intensification of the hydrological cycle driven by climate change, coupled with reductions in runoff due to water extractions for human use and altered discharge from impoundments, is expected to alter the hydrologic rhythmicity of floodplain rivers with significant consequences for both biodiversity and productivity.