Viruses are abundant yet understudied members of soil environments that influence terrestrial biogeochemical cycles. Here, we characterized the dsDNA viral diversity in biochar-amended agricultural soils at the preplanting and harvesting stages of a tomato growing season via paired total metagenomes and viral size fraction metagenomes (viromes). Size fractionation prior to DNA extraction reduced sources of nonviral DNA in viromes, enabling the recovery of a vaster richness of viral populations (vOTUs), greater viral taxonomic diversity, broader range of predicted hosts, and better access to the rare virosphere, relative to total metagenomes, which tended to recover only the most persistent and abundant vOTUs. Of 2961 detected vOTUs, 2684 were recovered exclusively from viromes, while only three were recovered from total metagenomes alone. Both viral and microbial communities differed significantly over time, suggesting a coupled response to rhizosphere recruitment processes and/or nitrogen amendments. Viral communities alone were also structured along an 18 m spatial gradient. Overall, our results highlight the utility of soil viromics and reveal similarities between viral and microbial community dynamics throughout the tomato growing season yet suggest a partial decoupling of the processes driving their spatial distributions, potentially due to differences in dispersal, decay rates, and/or sensitivities to soil heterogeneity.

Removal of nitrogen (N) and phosphorus (P) from water and wastewater through the use of various sorbents is often considered an economically viable way for supplementing conventional methods. Biochar has been widely studied for its potential adsorption capabilities for soluble N and P, but the performance of different types of biochars can vary widely. In this review, we summarized the adsorption capacities of biochars in removing N (NH4-N and NO3-N) and P (PO4-P) based on the reported data, and discussed the possible mechanisms and influencing factors. In general, the NH4-N adsorption capacity of unmodified biochars is relatively low, at levels of less than 20 mg/g. This adsorption is mainly via ion exchange and/or interactions with oxygencontaining functional groups on biochar surfaces. The affinity is even lower for NO3-N, because of electrostatic repulsion by negatively charged biochar surfaces. Precipitatio n of PO4-P by metals/metal oxides in biochar is the primary mechanism for PO4-P removal.Biochars modified by metals have significantly higher capacity to remove NH4-N, NO3-N, and PO4-P than unmodified biochar, due to the change in surface charge and the increase in metal oxides on the biochar surface. Ambient conditions in the aqueous phase, including temperature, pH, and co-existing ions, can significantly alter the adsorption of N and P by biochars, indicating the importance of optimal processing parameters for N and P removal. However, the release of endogenous N and P from biochar to water can impede its performance, and the presence of competing ions in water and wastewater poses practical challenges for the use of biochar for nutrient removal. In conclusion, more progress is needed to improve the performance of biochars and overcome challe nges before the widespread field application of biochar for N and P removal is realized.

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Viruses are abundant yet understudied members of soil environments that influence terrestrial biogeochemical cycles. Here, we characterized the dsDNA viral diversity in biochar-amended agricultural soils at the pre-planting and harvesting stages of a tomato growing season via paired total metagenomes and viromes. Size fractionation prior to DNA extraction reduced sources of non-viral DNA in viromes, enabling the recovery of a vaster richness of viral populations (vOTUs), greater viral taxonomic diversity, broader range of predicted hosts, and better access to the rare virosphere, relative to total metagenomes, which tended to recover only the most persistent and abundant vOTUs. Of 2,961 detected vOTUs, 2,684 were recovered exclusively from viromes, while only three were recovered from total metagenomes alone. Both viral and microbial communities differed significantly over time, suggesting a coupled response to rhizosphere recruitment processes and nitrogen amendments. Viral communities alone were also structured along a spatial gradient. Overall, our results highlight the utility of soil viromics and reveal similarities between viral and microbial community dynamics throughout the tomato growing season yet suggest a partial decoupling of the processes driving their spatial distributions, potentially due to differences in dispersal, decay rates, and/or sensitivities to soil heterogeneity.

Abstract. Biochar is purported to provide agricultural benefits when added to the soil, through changes in soil water hydraulic conductivity (Ksat), and increased nutrient retention through chemical or physical means. Despite increased interest and investigation, there remains uncertainty regarding the ability of biochar to deliver these agronomic benefits due to differences in biochar feedstock, production method, production temperature and soil texture. In this project, a suite of experiments was carried out using biochars of diverse feedstocks and production temperatures, in order to determine the biochar parameters which may optimize agricultural benefits. Sorption experiments were performed with seven distinct biochars to determine sorption efficiencies for ammonium and nitrate. Only one biochar effectively retained nitrate, while all biochars bound ammonium. The three biochars with the highest binding capacities (produced from almond shell at 500 and 800 °C (AS500 and AS800) and softwood at 500 °C (SW500)) were chosen for column experiments. Biochars were amended to a sandy loam and a silt loam at 0 and 2 % (w/w) and saturated hydraulic conductivity (Ksat) was measured. Biochars reduced Ksat in both soils by 64–80 %, with the exception of AS800, which increased Ksat by 98 % in the silt loam. Breakthrough curves for nitrate and ammonium, as well as leachate nutrient concentration, were also measured in the sandy loam columns. All biochars significantly decreased the quantity of ammonium in the leachate, by 22 to 78 %, and slowed its movement through the soil profile. Ammonium retention was linked to high cation exchange capacity and a high oxygen to carbon ratio, indicating that the primary control of ammonium retention in biochar-amended soils is the chemical affinity between biochar surfaces and ammonium. Biochars had little to no effect on the timing of nitrate release, and only SW500 decreased total quantity, by 27 to 36 %. The ability of biochar to retain nitrate may be linked to high surface area, suggesting a physical entrapment rather than a chemical binding. Together, this work sheds new light on the combined chemical and physical means by which biochar may alter soils to impact nutrient leaching and hydraulic conductivity for agricultural production.