We report the isolation and physiological characterization of novel, psychrophilic, iron-oxidizing bacteria (FeOB) from low-temperature weathering habitats in the vicinity of the Juan de Fuca deep-sea hydrothermal area. The FeOB were cultured from the surfaces of weathered rock and metalliferous sediments. They are capable of growth on a variety of natural and synthetic solid rock and mineral substrates, such as pyrite (FeS 2 ), basalt glass (ϳ10 wt% FeO), and siderite (FeCO 3 ), as their sole energy source, as well as numerous aqueous Fe substrates. Growth temperature characteristics correspond to the in situ environmental conditions of sample origin; the FeOB grow optimally at 3 to 10°C and at generation times ranging from 57 to 74 h. They are obligate chemolithoautotrophs and grow optimally under microaerobic conditions in the presence of an oxygen gradient or anaerobically in the presence of nitrate. None of the strains are capable of using any organic or alternate inorganic substrates tested. The bacteria are phylogenetically diverse and have no close Fe-oxidizing or autotrophic relatives represented in pure culture. One group of isolates are ␥-Proteobacteria most closely related to the heterotrophic bacterium Marinobacter aquaeolei (87 to 94% sequence similarity). A second group of isolates are ␣-Proteobacteria most closely related to the deep-sea heterotrophic bacterium Hyphomonas jannaschiana (81 to 89% sequence similarity). This study provides further evidence for the evolutionarily widespread capacity for Fe oxidation among bacteria and suggests that FeOB may play an unrecognized geomicrobiological role in rock weathering in the deep sea.In the deep-sea environment, hydrothermal habitats are recognized as sites that harbor unique biological ecosystems that are underpinned by chemosynthetic microbial primary production (22, 26). These prokaryotes derive energy from oxidation of reduced chemicals emanating from these sites (e.g., hydrogen sulfide [H 2 S]) and fix ambient CO 2 for cellular organic carbon needs. However, not all reduced chemicals released at these sites are available for immediate conversion to biomass. Rather, the interaction between geothermally heated fluids and cold seawater results in the precipitation of massive mineral deposits, primarily metal sulfides (40). Sulfides occur as chimney structures, brecciated rubble, particulate material (black smoke), and metalliferous sediment formed by settling particles. These deposits are composed of minerals such as pyrite (FeS 2 ), chalcopyrite (CuFeS 2 ), sphalerite (ZnS), marcasite (FeS 2 ), and pyrrhotite (FeS). At circumneutral pH in the presence of O 2 (and other suitable oxidants, e.g., Fe 3ϩ ), these minerals will oxidize abiogenically (33-35). Similar to the oxidation of reduced aqueous chemical species, oxidation of these minerals releases energy, which if mediated or catalyzed by microorganisms can be harnessed for cellular processes.On a quantitative basis, sulfide and sulfur oxidation may account for a large portion of the geochemic...

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Few studies have directly measured sulfate reduction at hydrothermal vents, and relatively little is known about how environmental or ecological factors influence rates of sulfate reduction in vent environments. A better understanding of microbially mediated sulfate reduction in hydrothermal vent ecosystems may be achieved by integrating ecological and geochemical data with metabolic rate measurements. Here we present rates of microbially mediated sulfate reduction from three distinct hydrothermal vents in the Middle Valley vent field along the Juan de Fuca Ridge, as well as assessments of bacterial and archaeal diversity, estimates of total biomass and the abundance of functional genes related to sulfate reduction, and in situ geochemistry. Maximum rates of sulfate reduction occurred at 90 °C in all three deposits. Pyrosequencing and functional gene abundance data revealed differences in both biomass and community composition among sites, including differences in the abundance of known sulfate-reducing bacteria. The abundance of sequences for Thermodesulfovibro-like organisms and higher sulfate reduction rates at elevated temperatures suggests that Thermodesulfovibro-like organisms may have a role in sulfate reduction in warmer environments. The rates of sulfate reduction presented here suggest that—within anaerobic niches of hydrothermal deposits—heterotrophic sulfate reduction may be quite common and might contribute substantially to secondary productivity, underscoring the potential role of this process in both sulfur and carbon cycling at vents.

The role of deep‐sea microbial communities in the weathering of hydrothermal vent deposits is assessed using mineralogical and molecular biological techniques. The phylogenetic diversity of varied deep‐sea bare rock habitats associated with the oceanic spreading centre at the Juan de Fuca Ridge was accessed using restriction fragment length polymorphism (RFLP) and rDNA sequencing. The mineralogical composition of the deposits used for phylogenetic analysis was determined by X‐ray diffraction in order to determine the proportion and composition of sulphide minerals, and to determine degree of alteration associated with each sample. RFLP analyses resulted in 15 unique patterns, or Operational Taxonomic Units (OTUs). Most environments examined were dominated by only one or two OTUs, which often comprised approximately 60% of the rDNA clones generated from that environment. Only one environment, the Mound, had a representative rDNA clone from every OTU identified in this study. For one other environment, ODP sediments, rDNA clones were all contained in a single OTU. The diversity of the microbial community is found to decrease with decreasing reactivity of the sulphide component in the samples and with increasing presence of alteration products. Phylogenetic analyses reveal that OTUs contain representatives of the epsilon‐, beta‐ and gamma‐subdivisions of the Proteobacteria. OTU1, which dominates clone libraries from every environment and is increasingly dominant with increasing rock alteration, is closely related to a group of chemolithoautotrophic iron‐oxidizing bacteria that have been recently isolated from the deep sea. The apparent abundance and widespread distribution within the samples examined of the putative iron‐oxidizing bacteria that may be represented by OTU1 suggests that this physiological group could play an important role in rock‐weathering and carbon fixation at the seafloor.

Fecal pellets were produced by Acartia tonsa fed 14 C-labeled diatom, cryptophyte, and dinoflagellate diets, and were incubated in 1.2 µm-filtered Long Island Sound seawater. Based on the 14 C label, the decrease in fpOC (fecal pellet organic carbon), the release and fate of dissolved organic carbon (DOC) and particulate organic carbon (POC), as well as bacterial production and enzymatic activity, were followed over a 96 h period. fpOC decreased by 9, 14, and 19% d -1 in diatom, cryptophyte, and dinoflagellate pellets, respectively. There was a fast, possibly passive, leakage of DOC from pellets from all 3 diets within a few hours after egestion, which may not have been utilized by attached bacteria. Bacterial production rates were 17, 12, and 31 pg C pellet -1 h -1, on diatom, cryptophyte, and dinoflagellate pellets, respectively. These were 5 orders of magnitude higher than production rates of free-living bacteria, indicating that copepod fecal pellets are hot spots of pelagic microbial production. The high production was caused primarily by high initial bacterial abundances. Accordingly, production and growth were entirely uncoupled in diatom pellets. There were no increases in abundance of attached bacteria on any of the 3 diets, indicating that the produced bacterial cells were released from the fecal pellets. Attached bacteria had a higher ectoenzymatic activity than free-living bacteria, but their production and ectoenzymatic activity were uncoupled and they only assimilated a minor fraction of the released DOC. DOC was therefore released favoring free-living microbes. The chitinase activity, which increased several-fold, was coupled to the production of attached bacteria; thus, chitin may play an important role in bacterial production on copepod fecal pellets.KEY WORDS: Copepod fecal pellets · Fecal pellet decomposition · Pelagic DOC flux · Pelagic POC flux · Attached bacterial production · Ectoenzymatic activity Resale or republication not permitted without written consent of the publisherAquat Microb Ecol 33: [279][280][281][282][283][284][285][286][287][288] 2003 cycled (Wotton & Malmqvist 2001, Turner 2002 and that most carbon originating from these fecal pellets remains part of the long-lived organic carbon in the epipelagic (Legendre & Michaud 1998). Hence, the role of fecal pellets from small copepods is that of supplying nutrients to the epipelagic planktonic microbial community rather than maintaining the vertical flux of organic matter.Copepod fecal pellets host an extensive flora of attached bacteria (Gowing & Silver 1983, Bianchi et al. 1992, Delille & Razouls 1994, Hansen & Bech 1996. Breakdown of the fecal pellets is in part governed by microbial decomposition driven by the hydrolytic activity of these bacteria. The potential hydrolytic activity is generally high in pelagic aggregates of organic matter (Karner & Herndl 1992, Smith et al. 1992, and if this potential is fully exploited in fecal pellets, then decomposition and hence recycling of organic matter may occur rapidly....