The interaction between the viral protein linked to the genome (VPg) of turnip mosaic potyvirus (TuMV) and the translation eukaryotic initiation factor eIF(iso)4E of Arabidopsis thaliana has previously been reported. eIF(iso)4E binds the cap structure (m 7 GpppN, where N is any nucleotide) of mRNAs and has an important role in the regulation in the initiation of translation. In the present study, it was shown that not only did VPg bind eIF(iso)4E but it also interacted with the eIF4E isomer of A. thaliana as well as with eIF(iso)4E of Triticum aestivum (wheat). The interaction domain on VPg was mapped to a stretch of 35 amino acids, and substitution of an aspartic acid residue found within this region completely abolished the interaction. The cap analogue m 7 GTP, but not GTP, inhibited VPg-eIF(iso)4E complex formation, suggesting that VPg and cellular mRNAs compete for eIF(iso)4E binding. The biological significance of this interaction was investigated. Brassica perviridis plants were infected with a TuMV infectious cDNA (p35Tunos) and p35TuD77N, a mutant which contained the aspartic acid substitution in the VPg domain that abolished the interaction with eIF(iso)4E. After 20 days, plants bombarded with p35Tunos showed viral symptoms, while plants bombarded with p35TuD77N remained symptomless. These results suggest that VPg-eIF(iso)4E interaction is a critical element for virus production.

Model results indicated that the mean WWTP influent concentration of NoV GII (3.9 log 10 gc/liter; 95% credible interval [CI], 3.5, 4.3 log 10 gc/liter) is larger than the value for NoV GI (1.5 log 10 gc/liter; 95% CI, 0.4, 2.4 log 10 gc/liter), with large variations occurring from one WWTP to another. For WWTPs with mechanical systems and chlorine disinfection, mean log 10 reductions were ؊2.4 log 10 gc/liter (95% CI, ؊3.9, ؊1.1 log 10 gc/liter) for NoV GI, ؊2.7 log 10 gc/liter (95% CI, ؊3.6, ؊1.9 log 10 gc/liter) for NoV GII, and ؊2.9 log 10 PFU per liter (95% CI, ؊3.4, ؊2.4 log 10 PFU per liter) for MSCs. Comparable values for WWTPs with lagoon systems and chlorine disinfection were ؊1.4 log 10 gc/liter (95% CI, ؊3.3, 0.5 log 10 gc/liter) for NoV GI, ؊1.7 log 10 gc/liter (95% CI, ؊3.1, ؊0.3 log 10 gc/liter) for NoV GII, and ؊3.6 log 10 PFU per liter (95% CI, ؊4.8, ؊2.4 PFU per liter) for MSCs. Within WWTPs, correlations exist between mean NoV GI and NoV GII influent concentrations and between the mean log 10 reduction in NoV GII and the mean log 10 reduction in MSCs.H uman norovirus (NoV) is the leading cause of food-associated gastroenteritis in the United States (1) and Canada (2). U.S. residents are estimated to experience five episodes of norovirus gastroenteritis in their lifetimes (3). NoV is primarily spread via the fecal-oral route. However, attribution of a particular case of NoV illness to a specific source is complex. The transmission may be direct (person to person) or indirect (via contact with contaminated fomites) or may occur through the ingestion of contaminated food or water (4). Noroviruses are genetically diverse, comprising six genogroups (5), three of which (genogroup I [GI], GII, and GIV) are capable of causing illness in humans (6).Among foodborne NoV outbreaks, bivalve molluscs (e.g., clams, oysters, mussels), leafy vegetables, and fruits are the most frequently implicated (7). More than half of the norovirus outbreaks attributed to the consumption of bivalve molluscs in the United States during the years from 2001 to 2008 are believed to have originated from contamination during production or processing (7). Bivalve molluscan shellfish typically grow in estuaries, which may contain NoV-contaminated human fecal material from municipal wastewater outfalls, combined sewer overflow, or nonpoint sources of pollution, including human waste discharged from marine vessels (8, 9). Bivalve molluscan shellfish feed on algae from the surrounding water. During this feeding process, each bivalve mollusc may filter 20 to 90 liters of water per day and bioaccumulate a variety of microorganisms, including viruses and bacteria that are associated with pollution sources (8,(10)(11)(12). Significantly, molluscan shellfish have been found to retain viruses to a greater extent and for much longer periods than they do bacteria (8,13,14). Bivalve molluscs, therefore, may become contaminated with NoV when they are grown in harvesting areas contaminated with human wastes.In the United States and in Canada, ar...

Aims:  The aim of this study was to compare the performance of four TaqMan RT‐PCR assays with a commonly used nested RT‐PCR and to include the Feline calicivirus (FCV) as an internal control. Methods and Results:  RNA extracted from 87 swine faecal samples and 103 swine blood samples was subjected to different detection systems. Faecal samples naturally contaminated with Hepatitis E virus (HEV) and negative samples were artificially inoculated with 3·2 × 103 PFU of FCV. Detection results obtained on faecal and plasma samples were 35·6% and 4·9% with the nested RT‐PCR assay, 8·0% and 0%, 0% and 0%, 13·8% and 0% and 36·8% and 3·9% with TaqMan systems A, B, C and D respectively. The Ct means obtained with the multiplex TaqMan assay were 30·11 and 30·43 for the detection of FCV with HEV contaminated samples and negative samples. Conclusions:  The TaqMan system D was more suitable for the detection of swine HEV strains than the three others and FCV was integrated successfully as an internal control. Significance and Impact of the Study:  FCV was demonstrated as an efficient control to monitor the RNA extraction process and HEV amplification procedure in a multiplex HEV/FCV TaqMan assay. This control would be helpful in limiting false negative results.

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Aims:  To demonstrate that produce rinsates used for RT‐qPCR detection of foodborne viruses may cause significant PCR inhibition and propose a means to reduce its impact on sensitivity. Methods and Results:  Here, it is shown that rinsing and concentration from spinach and precut lettuce have the potential to generate RNA extracts that are inhibitory to RT‐qPCRs assembled from commercial kits for the detection of norovirus GII (NoV GII), hepatitis A virus (HAV), hepatitis E virus (HEV), rotavirus (RV) and feline calicivirus (FCV) as sample process control. It is further shown that the addition of bovine serum albumin (BSA) to those reactions restored a positive signal in all cases. The effect of BSA was dependent upon the primer/probe combination. Moreover, two of the detection systems (FCV and HAV) strongly benefited from the addition of BSA even in the absence of PCR inhibitors. Conclusions:  BSA was shown to restore positive signals in five different RT‐qPCR systems that were otherwise completely inhibited by produce rinsate extracts. It is therefore suggested to consider the addition of BSA to RT‐qPCRs for the detection of foodborne viruses when inhibition is observed. Significance and Impact of the Study:  This study clearly demonstrates the potency of PCR inhibitors generated during routine virus concentration from produce and that it can be alleviated by the addition of BSA to the RT‐qPCRs. Although used elsewhere, the addition of BSA to PCRs is not a common practice in this growing field of research.