Fungal spores can account for large proportions of air particulate matter, and they may potentially influence the hydrological cycle and climate as nuclei for water droplets and ice crystals in clouds, fog, and precipitation. Moreover, some fungi are major pathogens and allergens. The diversity of airborne fungi is, however, not well-known. By DNA analysis we found pronounced differences in the relative abundance and seasonal cycles of various groups of fungi in coarse and fine particulate matter, with more plant pathogens in the coarse fraction and more human pathogens and allergens in the respirable fine particle fraction (<3 m). Moreover, the ratio of Basidiomycota to Ascomycota was found to be much higher than previously assumed, which might also apply to the biosphere.atmospheric aerosol ͉ bioaerosol ͉ DNA analysis ͉ fungal spores R ecent studies have shown that fungal spores and other biological particles can account for large proportions of aerosol particle mass in pristine rainforest air as well as in rural and urban environments (1-5). For example, fungal spores were found to account for up to 45% of coarse particle mass (Ͼ1 m) in tropical rainforest air and up to 4-11% of fine particle mass (Յ2.5 m) in urban and rural air (3). Fungi have also been found in clouds, fog, and precipitation where these and other biological particles can act as nuclei for water droplets and ice crystals and can influence precipitation patterns and the Earth's energy budget (e.g., refs. 6-17). On average, the number and mass concentrations of fungal spores in continental boundary layer air are on the order of 10 3 -10 4 m Ϫ3 and approximately 1 g m Ϫ3 , respectively, and the estimated global emissions of approximately 50 Tg yr Ϫ1 are among the largest sources of organic aerosol (1).Some fungi are major pathogens or allergens for humans, animals, and plants, and air is the primary medium for their dispersal (18)(19)(20), but the diversity of fungi in air particulate matter is not well-known. The traditional cultivation, microscopy, and chemical tracer techniques applied in earlier studies were insufficient for a broad coverage of different fungal species, and recently reported first applications of molecular genetic techniques were very limited in scope and methodology as discussed below.In this study, we investigated and characterized the diversity and frequency of occurrence of fungi in air particulate matter by DNA extraction and sequence analysis of the internal transcribed spacer region (ITS).

Abstract. The Amazon rain forest experiences the combined pressures from human-made deforestation and progressing climate change, causing severe and potentially disruptive perturbations of the ecosystem's integrity and stability. To intensify research on critical aspects of Amazonian biosphere–atmosphere exchange, the Amazon Tall Tower Observatory (ATTO) has been established in the central Amazon Basin. Here we present a multi-year analysis of backward trajectories to derive an effective footprint region of the observatory, which spans large parts of the particularly vulnerable eastern basin. Further, we characterize geospatial properties of the footprint regions, such as climatic conditions, distribution of ecoregions, land cover categories, deforestation dynamics, agricultural expansion, fire regimes, infrastructural development, protected areas, and future deforestation scenarios. This study is meant to be a resource and reference work, helping to embed the ATTO observations into the larger context of human-caused transformations of Amazonia. We conclude that the chances to observe an unperturbed rain forest–atmosphere exchange at the ATTO site will likely decrease in the future, whereas the atmospheric signals from human-made and climate-change-related forest perturbations will increase in frequency and intensity.

&lt;p&gt;&lt;strong&gt;Abstract.&lt;/strong&gt; The Amazon rain forest experiences the combined pressures from man-made deforestation and progressing climate change, causing severe and potentially disruptive perturbations of the ecosystem's integrity and stability. To intensify research on critical aspects of Amazonian biosphere-atmosphere exchange, the Amazon Tall Tower Observatory (ATTO) has been established in the central Amazon Basin. Here we present a multi-year analysis of backward trajectories to derive an effective footprint region of the observatory, which spans large parts of the particularly vulnerable eastern basin. Further, we characterize geospatial properties of the footprint regions, such as climatic conditions, distribution of ecoregions, land cover categories, deforestation dynamics, agricultural expansion, fire regimes, infrastructural development, protected areas, as well as future deforestation scenarios. This study is meant to be a resource and reference work, helping to embed the ATTO observations into the larger context of man-made transformations of Amazonia. We conclude that the chances to observe an unperturbed rain forest-atmosphere exchange will likely decrease in the future, whereas the atmospheric signals from man-made and climate change-related forest perturbations will likewise increase in frequency and intensity.&lt;/p&gt;

Archaea are widespread and abundant in many terrestrial and aquatic environments, and are thus outside extreme environments, accounting for up to similar to 10% of the prokaryotes. Compared to bacteria and other microorganisms, however, very little is known about the abundance, diversity, and dispersal of archaea in the atmosphere. By means of DNA analysis and Sanger sequencing targeting the 16S rRNA (435 sequences) and amoA genes in samples of air particulate matter collected over 1 year at a continental sampling site in Germany, we obtained first insights into the seasonal dynamics of airborne archaea. The detected archaea were identified as Thaumarchaeota or Euryarchaeota, with soil Thaumarchaeota (group I. 1b) being present in all samples. The normalized species richness of Thaumarchaeota correlated positively with relative humidity and negatively with temperature. This together with an increase in bare agricultural soil surfaces may explain the diversity peaks observed in fall and winter. The detected Euryarchaeota were mainly predicted methanogens with a low relative frequency of occurrence. A slight increase in their frequency during spring may be linked to fertilization processes in the surrounding agricultural fields. Comparison with samples from the Cape Verde islands (72 sequences) and from other coastal and continental sites indicates that the proportions of Euryarchaeota are enhanced in coastal air, which is consistent with their suggested abundance in marine surface waters. We conclude that air transport may play an important role in the dispersal of archaea, including assumed ammonia-oxidizing Thaumarchaeota and methanogens

Abstract. Fungi play important roles in the environment, agriculture, and human health. Most fungal species spread by winddriven dispersal of spores, determining their occurrence and distribution in different environments. The dynamics of airborne fungi and their dependence on lifestyle and environmental conditions, however, are not well characterized. 10Here, we categorize the fungi detected in coarse and fine aerosol samples from continental boundary layer air using a lifestyle classification scheme that differentiates whether the fungi are (A) primarily associated to herbaceous or woody plants and (B), whether they are saprophytic, plant pathogenic, or surface inhabitants."Herbaceous" fungi exhibit stronger seasonal variations and correlations with meteorological factors. We find two distinct clusters when viewing the distribution of the fungi between the coarse and fine size fractions. Pathogenic and surface-15 inhabiting herbaceous fungi are shifted towards the coarse size fraction, adapted to impaction on plant surfaces, while saprophytic fungi are shifted towards the fine fraction or are evenly distributed, adapted more to sedimentation and longer atmospheric residence times."Wood" fungi display sporadic occurrences, seen for most saprophytes, or year-round occurrences with seasonal to polycyclic peaks seen amongst pathogens. In comparison to herbaceous fungi they show weaker correlations with meteorological factors. 20They display more even coarse-fine distributions, which may be an adaptation to the calm conditions beneath the forest canopy.The differences reflect lifestyle-dependent sporulation strategies which may facilitate and improve the assessment and forecasting of the abundance and spread of pathogenic fungi and related issues such as crop protection in view of land-use and climate change.

Abstract. Archaea are ubiquitous in terrestrial and marine environments and play an important role in biogeochemical cycles. Although air acts as the primary medium for their dispersal among different habitats, their diversity and abundance is not well characterized. The main reason for this lack of insight is that archaea are difficult to culture, seem to be low in number in the atmosphere, and have so far been difficult to detect even with molecular genetic approaches. However, to better understand the transport, residence time, and living conditions of microorganisms in the atmosphere as well as their effects on the atmosphere and vice versa, it is essential to study all groups of bioaerosols. Here we present an in-depth analysis of airborne archaea based on Illumina sequencing of 16S rRNA genes from atmospheric coarse and fine particulate matter samples and show seasonal dynamics and discuss anthropogenic influences on the diversity, composition, and abundance of airborne archaea.The relative proportions of archaea to bacteria, the differences of the community composition in fine and coarse particulate matter, and the high abundance in coarse matter of one typical soil related family, the Nitrososphaeraceae, point to local phyllosphere and soil habitats as primary emission sources of airborne archaea.We found comparable seasonal dynamics for the dominating Euryarchaeota classes and Crenarchaeota orders peaking in summer and fall. In contrast, the omnipresent Cenarchaeales and the Thermoplasmata occur only throughout summer and fall. We also gained novel insights into archaeal composition in fine particulate matter (< 3 µm), with Cenarchaeaceae, Nitrososphaeraceae, Methanosarcinales, Thermoplasmata, and the genus Nitrosopumilus as the dominating taxa.The seasonal dynamics of methanogenic Euryarchaeota point to anthropogenic activities, such as fertilization of agricultural fields with biogas substrates or manure, as sources of airborne archaea. This study gains a deeper insight into the abundance and composition of archaea in the atmosphere, especially within the fine particle mode, which adds to a better understanding of the overall atmospheric microbiome.

Abstract. Certain biological particles are highly efficient ice nuclei (IN), but the actual contribution of bioparticles to the pool of atmospheric IN and their relation to precipitation are not well characterized. We investigated the composition of bioaerosols, ice nucleation activity, and the effect of rainfall by metagenomic sequencing and freezing experiments of aerosol samples collected during the INUIT 2016 campaign in a rural dryland on the eastern Mediterranean island of Cyprus. Taxonomic analysis showed community changes related to rainfall. For the rain-affected samples, we found higher read proportions of fungi, particularly of Agaricomycetes, which are a class of fungi that actively discharge their spores into the atmosphere in response to humidity changes. In contrast, the read proportions of bacteria were reduced, indicating an effective removal of bacteria by precipitation. Freezing experiments showed that the IN population in the investigated samples was influenced by both rainfall and dust events. For example, filtration and heat treatment of the samples collected during and immediately after rainfall yielded enhanced fractions of heat-sensitive IN in the size ranges larger than 5 µm and smaller than 0.1 µm, which were likely of biological origin (entire bioparticles and soluble macromolecular bio-IN). In contrast, samples collected in periods with dust events were dominated by heat-resistant IN active at lower temperatures, most likely mineral dust. The DNA analysis revealed low numbers of reads related to microorganisms that are known to be IN-active. This may reflect unknown sources of atmospheric bio-IN as well as the presence of cell-free IN macromolecules that do not contain DNA, in particular for sizes < 0.1 µm. The observed effects of rainfall on the composition of atmospheric bioaerosols and IN may influence the hydrological cycle (bioprecipitation cycle) as well as the health effects of air particulate matter (pathogens, allergens).

Oomycetes, also named Peronosporomycetes, are one of the most important and widespread groups of plant pathogens, leading to significant losses in the global agricultural productivity. They have been studied extensively in ground water, soil, and host plants, but their atmospheric transport vector is not well characterized. In this study, the occurrence of airborne Oomycetes was investigated by Sanger sequencing and quantitative PCR of coarse and fine aerosol particle samples (57 filter pairs) collected over a 1-year period (2006–2007) and full seasonal cycle in Mainz, Germany. In coarse particulate matter, we found 55 different hypothetical species (OTUs), of which 54 were plant pathogens and 29 belonged to the genus Peronospora (downy mildews). In fine particulate matter (<3 μm), only one species of Hyaloperonospora was found in one sample. Principal coordinate analysis of the species composition revealed three community clusters with a dependence on ambient temperature. The abundance of Oomycetes rRNA genes was low in winter and enhanced during spring, summer, and fall, with a dominance of Phytophthora, reaching a maximum concentration of ∼1.6 × 106 rRNA genes per cubic meter of sampled air in summer. The presence and high concentration of rRNA genes in air suggests that atmospheric transport, which can lead to secondary infection, may be more important than currently estimated. This illustrates the need for more current and detailed datasets, as potential seasonal shifts due to changing meteorological conditions may influence the composition of airborne Oomycetes. An insight into the dynamics of airborne plant pathogens and their major drivers should be useful for improved forecasting and management of related plant diseases.