The widespread sea hare species Aplysia parvula includes four genetically distinct lineages, containing a total of ten different species. While the four lineages can be differentiated by their external characteristics, species in each clade are often morphologically indistinguishable. A review of literature and type material revealed that several available names exist for species recognized herein: Aplysia parvula is retained for a species from the north-eastern Atlantic; A. atromarginata, A. elongata, A. nigrocincta and A. japonica are resurrected for species from the western Pacific Ocean, the Hawaiian Islands, the Indian and western Pacific Oceans, and Japan and Korea, respectively. Two new species names are introduced for animals from the eastern Pacific, and the Atlantic and Indian Oceans. Mitochondrial sequences from Mediterranean and eastern Atlantic specimens identified as A. parvula, resulted to be A. punctata. However, two specimens were heterozygotes of histone H3 alleles of A. punctata and of a new Atlantic species described herein, suggesting they could be hybrids. These results contradict the hypothesis that the Mediterranean was colonized by A. parvula. If an invasion occurred, it was a limited introgression of nDNA from an Atlantic species into native A. punctata populations.

K. (2015). Mitochondrial genomes advance phylogenetic hypotheses for Tylenchina (Nematoda: Chromadorea). -Zoologica Scripta, 44, 446-462. Within the nematode class Chromadorea, the suborder Tylenchina is an ecologically and morphologically diverse assemblage of nematodes that includes free-living microbivores, fungivores and various types of plant parasites. A recent nematode classification system based largely on SSU rDNA phylogenetic trees classified suborder Tylenchina to include four infraorders: Panagrolaimomorpha, Cephalobomorpha, Tylenchomorpha and Drilonematomorpha, and phylogenetic relationships among species of these infraorders have not always been robustly supported. In this study, we determined the complete mitochondrial genome sequences of three Tylenchina species (Aphelenchus avenae [Aphelenchidae, Tylenchomorpha], Halicephalobus gingivalis, Panagrellus redivivus [Panagrolaimomorpha]) and the partial genome sequence of Acrobeles complexus (Cephalobomorpha) and used these sequences to infer phylogenetic relationships among representatives of the Tylenchina and other nematodes. Phylogenetic analysis of amino acid sequences for 12 protein-coding genes of 100 nematode species supports monophyly of: Chromadorea, Spiruromorpha, Oxyuridomorpha, Ascarididae + Toxocaridae + Anisakidae, Meloidogynidae + Pratylenchidae + Heteroderidae and Aphelenchoidea. Bayesian and maximum-likelihood analyses also show the nested position of Diplogasteromorpha within Rhabditomorpha, and Rhigonematomorpha within Ascaridomorpha. These analyses also show non-monophyly of: clade III, Ancylostomatidae, Panagrolaimomorpha, Tylenchina and Tylenchomorpha. Reconstructed mitochondrial genome phylogeny also revealed that among two main Tylenchomorpha groups, the monophyletic group representing Aphelenchoidea species was sister to the large clade consisting of Ascaridomorpha, Diplogasteromorpha, Rhabditomorpha and Rhigonematomorpha and some Panagrolaimomorpha species, whereas Tylenchoidea species were sister to the most inclusive assemblage containing all infraordinal groups of Chromadorea, except for P. redivivus (Panagrolaimomorpha) and Acrobeles complexus (Cephalobomorpha). The monophyly of Aphelenchoidea (i.e. sister relationship between Aphelenchidae and Aphelenchoididae) recovered in this study indicates that similarity in certain aspects of pharyngeal structure between these two families appears best explained by common ancestry, rather than convergent evolution.

The present-day genetic structure of a species reflects both historical demography and patterns of contemporary gene flow among populations. To precisely understand how these factors shape current population structure of the northwestern (NW) Pacific marine gastropod, Thais clavigera, we determined the partial nucleotide sequences of the mitochondrial COI gene for 602 individuals sampled from 29 localities spanning almost the whole distribution of T. clavigera in the NW Pacific Ocean (~3,700 km). Results from population genetic and demographic analyses (AMOVA, ΦST-statistics, haplotype networks, Tajima’s D, Fu’s FS, mismatch distribution, and Bayesian skyline plots) revealed a lack of genealogical branches or geographical clusters, and a high level of genetic (haplotype) diversity within each of studied population. Nevertheless, low but significant genetic structuring was detected among some geographical populations separated by the Changjiang River, suggesting the presence of geographical barriers to larval dispersal around this region. Several lines of evidence including significant negative Tajima’s D and Fu’s FS statistics values, the unimodally shaped mismatch distribution, and Bayesian skyline plots suggest a population expansion at marine isotope stage 11 (MIS 11; 400 ka), the longest and warmest interglacial interval during the Pleistocene epoch. The lack of genetic structure among the great majority of the NW Pacific T. clavigera populations may be attributable to high gene flow by current-driven long-distance dispersal of prolonged planktonic larval phase of this species.

Of the four species in the genus Cadlina present in the northwestern Pacific region, C. japonica has been the only species recorded from South Korea. For the purpose of investigating Cadlina in Korean waters, specimens were collected from the Korean East Sea (Sea of Japan) by scuba diving. The radula and morphology of these specimens were examined by stereoscopic and scanning electron microscopy. Based on morphology, three species were identified in Korean waters, including the new species, Cadlina koreanasp. nov., C. umiushi (first record in South Korea), and C. japonica. Cadlina koreanasp. nov. somewhat resembles C. umiushi but differs in both its morphology as well as the structure of its radula. The background color of Cadlina koreanasp. nov. is translucent white, tubercles on the dorsum are opaque white and the yellow marginal band is absent. The radular formula of Cadlina koreanasp. nov. is 57 × 23.1.23 with a rectangular rachidian tooth. In addition, mitochondrial cytochrome c subunit 1 (COI), 16S ribosomal RNA (16S rRNA), and nuclear 28S ribosomal RNA (28S rRNA) gene sequences were generated and used for analysis of Automatic Barcode Gap Discovery (ABGD) and reconstruction of the phylogenetic tree. Morphological distinction and genetic analyses confirm that three Cadlina species are present in Korean waters of which Cadlina koreana is a new species.

Materials were collected by scuba diving in the subtidal zone of the Korean coast from June 2011 to October 2012. The collected specimens were narcotized with a 10% MgCl 2 solution, and fixed in 10% neutral buffered formalin or 97% ethanol to preserve. The specimens were examined with a stereoscopic microscope (Olympus SZ-61 with FuzhouTucsen TCA-3). Body lengths of most specimens were measured from the middle points of the rhinophores to the tip of posterior end by using ocular micrometers. Examined specimens were deposited at the National Institute of Biological Resources (NIBR), Incheon, Korea and Sangmyung University, Seoul, Korea. NIBR specimen numbers are recorded for the specimens. During a systematic study on Korean nudibranchs, two phyllidiid and two polycerid species were collected and identified with examination of their external morphological characters. As a result of the study, two phyllidiid species, Phyllidia ocellata Cuvier, 1804 and Phyllidiella pustulosa (Cuvier, 1804) were redescribed since there was no descriptions of these species with Korean specimens. And two polycerid species, Thecacera pennigera (Montagu, 1815) and Triopha catalinae (Cooper, 1863) were described as new to Korean fauna. Diagnostic characters of these species are described with illustrations in this study. DNA barcode data from three species examined were also provided for a supplement to morphological identifications.

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Hermissenda emurai is a species of sea slugs in the northwestern Pacific region. In this study, the complete mitochondrial genome of H. emurai (Mollusca: Facelinidae) collected from Korea was recorded. The assembled mitogenome of H. emurai was circular and 13,880 bp in length, including 27.1% A, 15.9% C, 20.5% G, and 36.5% T nucleotide distributions. The overall AT composition was 63.6% while the G-C composition was 36.4%. Phylogenetic analysis according to 12 protein coding genes (atp8 gene excluded) showed that H. emurai clustered with Sakuraeolis japonica in the order Nudibranchia.