The photocycle kinetics of bacteriorhodopsin were analyzed from 0 to 40 degrees C at 101 wavelengths (330-730 nm). The data can be satisfactorily approximated by eight exponents. The slowest component (half-time 20 ms at 20 degrees C) belongs to the 13-cis cycle. The residual seven exponentials that are sufficient to describe the all-trans photocycle indicate that at least seven intermediates of the all-trans cycle must exist, although only five spectrally distinct species (K, L, M, N, and O) have been identified. These seven exponentials and their spectra at different temperatures provide the basis for the discussion of various kinetic schemes of the relaxation. The simplest model of irreversible sequential transitions includes after the first K--> L step the quasiequilibria of L<-->M, M<-->N, and N<-->O intermediates. These quasiequilibria are controlled by rate-limiting dynamics of the protein and/or proton transfer steps outside the chromophore region. Thus there exists an apparent kinetic paradox (i.e., why is the number of exponents of relaxation (at least seven) higher than the number of distinct spectral intermediates (only five)), which can be explained by assuming that some of the transitions correspond to changes in the quasiequilibria between spectrally distinct intermediates (i.e., are spectrally silent).
The temperature and pH dependencies of the O(640) intermediate of the photocycle of bacteriorhodopsin (bR) were investigated by flash photolysis and T-jump experiments. The maximal concentration of the O(640) intermediate was found to be dependent on the temperature, which is described by a sigmoidal relationship. With increasing pH the midpoint of the sigmoidal curves shifts to higher temperatures. The Van't Hoff equation provides enthalpy and entropy values of the observed states. These results indicate that, in the investigated temperature (0-60 degrees C) and pH (pH 4.0-10.0) range, the sequence of the principal intermediates in the pathway "M-N-O-bR" does not change. The observations of the O(640) intermediate at pH < 8.0 and of the N(550) intermediate at pH > 8.0 are most probably due only to changes of the intrinsic rate constants of the bR photocycle, not to a different mechanism.
A model of the last parts of the bacteriorhodopsin (bR) photocycle is proposed on the basis of experimental data for the kinetic behavior of the 'O' intermediate during a temperature pulse in distilled water suspension. The model includes the previously proposed (but not well characterized) intermediate 'N' between the 'M' and 'O' states of bR. This intermediate exists in fast temperature-dependent quasi-stationary equilibrium with the red-shifted intermediate 'O' and has a maximum of absorption close to the bR spectrum.
Rotations of microscopic magnetic particles, magnetosomes, embedded into the cytoskeleton and subjected to the influence of an ac magnetic field and thermal noise are considered. Magnetosome dynamics is shown to comply with the conditions of the stochastic resonance under not-too-tight constraints on the character of the particle's fastening. The excursion of regular rotations attains the value of order of radian that facilitates explaining the biological effects of low-frequency weak magnetic fields and geomagnetic fluctuations. Such 1-rad rotations are effectively controlled by slow magnetic field variations of the order of 200 nT.There are many hypothetical mechanisms suggested to explain the biological effects of weak low-frequency magnetic fields. A brief review of the mechanisms may be found in [1] and the detailed discussion in [2]. At the same time, the physical nature of these effects remains unclear. The basic problem is that the interaction energy of biologically active molecules and the MF at the geomagnetic level is very small [3]. It is much smaller than the energy of thermal fluctuations κT ≈ 4 · 10 −14 erg at physiological temperatures.However, many organisms are well known to contain submicron magnetic particles. The energy of their turn in a weak magnetic field H is substantially greater than κT . For singledomain magnetite particles of radius r = 10 −5 cm or 100 nm in the geomagnetic field the energy µH ≈ vJH equals approximately 24κT , where µ is the magnetic moment of the particle, v and J are the volume and the saturation magnetization.The cytoplasm near cell membranes features such visco-elastic properties that the turning of a microparticle may serve as a stimulus to cell division or ignite a nerve impulse. Magnetite particles found in the brain tissues of animals and humans are of particular interest: this constitutes one of the possible mechanisms of the weak MF effect on the human organism [4]. The nerve tissue of the brain is separated from the circulatory system by the blood-brain barrier which is impermeable for most chemicals. In turn, the circulatory system is separated from the digestive system. Therefore, relatively large ferro-or ferrimagnetic particles cannot penetrate into brain tissue as a pollutant. They are found to have a biogenic origin, i.e. they appear over time as a direct result of the crystallization in brain matter. Biogenic magnetite particles are often called 'magnetosomes'; they were first discovered in bacteria that displayed magnetotaxis [5].The density of magnetosomes in the human brain is more than 5 · 10 6 , and in meninges more than 10 8 crystals per gram [6]. In fact, about 90% of the particles measured in this study were 10-70 nm in size, and 10% were 90-200 nm. The particles were grouped into ensembles of 50-100 crystals.
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