This article summarizes technical advances contained in the fifth major release of the Q-Chem quantum chemistry program package, covering developments since 2015. A comprehensive library of exchange–correlation functionals, along with a suite of correlated many-body methods, continues to be a hallmark of the Q-Chem software. The many-body methods include novel variants of both coupled-cluster and configuration-interaction approaches along with methods based on the algebraic diagrammatic construction and variational reduced density-matrix methods. Methods highlighted in Q-Chem 5 include a suite of tools for modeling core-level spectroscopy, methods for describing metastable resonances, methods for computing vibronic spectra, the nuclear–electronic orbital method, and several different energy decomposition analysis techniques. High-performance capabilities including multithreaded parallelism and support for calculations on graphics processing units are described. Q-Chem boasts a community of well over 100 active academic developers, and the continuing evolution of the software is supported by an “open teamware” model and an increasingly modular design.
We present explicit formulas for arbitrary-order derivatives of the energy, grand potential, electron density, and higher-order response functions with respect to the number of electrons, and the chemical potential for any smooth and differentiable model of the energy versus the number of electrons. The resulting expressions for global reactivity descriptors (hyperhardnesses and hypersoftnesses), local reactivity descriptors (hyperFukui functions and local hypersoftnesses), and nonlocal response functions are easy to evaluate computationally. Specifically, the explicit formulas for global/local/nonlocal hypersoftnesses of arbitrary order are derived using Bell polynomials. Explicit expressions for global and local hypersoftness indicators up to fifth order are presented.
This perspective article highlights the challenges in the theoretical description of photoreceptor proteins using multiscale modeling, as discussed at the CECAM workshop in Tel Aviv, Israel. The participants have identified grand challenges and discussed the development of new tools to address them. Recent progress in understanding representative proteins such as green fluorescent protein, photoactive yellow protein, phytochrome, and rhodopsin is presented, along with methodological developments.
Using results from atomic spectroscopy, we show that there are two types of flat-planes conditions. The first type of flat-planes condition occurs when the energy as a function of the number of electrons of each spin, Nα and Nβ, has a derivative discontinuity on a line segment where the number of electrons, Nα + Nβ, is an integer. The second type of flat-planes condition occurs when the energy has a derivative discontinuity on a line segment where the spin polarization, Nα – Nβ, is an integer, but does not have a discontinuity associated with an integer number of electrons. Type 2 flat planes are rare—we observed just 15 type 2 flat-planes conditions out of the 4884 cases we tested—but their mere existence has implications for the design of exchange-correlation energy density functionals. To facilitate the development of functionals that have the correct behavior with respect to both fractional number of electrons and fractional spin polarization, we present a dataset for the chromium atom and its ions that can be used to test new functionals
The viability and effectiveness of replacing an ensemble of embedded solute calculations by a single calculation using an average description of the solvent environment are evaluated. This work explores the fluctuations of the average description of the system obtained in two ways: from calculations on an ensemble of geometries and from an average environment constructed from the same ensemble. To this end, classical molecular dynamics simulations of a rigid acetone solute in SPCE water are performed in order to generate an ensemble of solvent environments. From this ensemble of solvent configurations, a number of different approaches for constructing an average solvent environment are employed. We perform a thorough numerical analysis of the fluctuations of the electrostatic potential experienced by the solute, as well as the resulting fluctuations of the solute’s electronic density, measured through its dipole moment and fitted atomic point charges. At the same time, we inspect the accuracy of the methods used to construct average environments. Finally, the proposed method for generating the embedding potential from an average environment density is applied to estimate the solvatochromic shift of the first excitation of acetone. In order to account for quantum confinement effects, which may be important in certain cases, the fluctuations in the shift due to the interaction with the solvent are evaluated using frozen-density-embedding theory. Our results demonstrate that, for normally distributed environments, the constructed average environment is a reasonably good representation of a fluctuating molecular solvent environment. We then provide guidance for future comparisons between these theoretical treatments of solute/solvent systems to experimental measurements.
We present a comprehensive relativistic coupled cluster study of the electronic structures of the ThO and ThS molecules in the spinor basis. Specifically, we use the single-reference coupled cluster and the multi-reference Fock Space Coupled Cluster (FSCC) methods to model their ground and electronically-excited states. Two variants of the FSCC method have been investigated: (a) one where the electronic spectrum is obtained from sector (1,1) of the Fock space, and (b) another where the excited states come from the doubly attached electronic states to the doubly charged systems (ThO2+ and ThS2+), that is, from sector (0,2) of the Fock space. Our study provides a reliable set of spectroscopic parameters such as bond lengths, excitation energies, and vibrational frequencies, as well as a detailed analysis of the electron correlation effects in the ThO and ThS molecules. Finally, we examine the first ionization potential and electron affinity of the above mentioned molecules.
Smooth model potentials with parameters selected to reproduce the spectrum of one-electron atoms are used to approximate the singular Coulomb potential. Even when the potentials do not mimic the Coulomb singularity, much of the spectrum is reproduced within the chemical accuracy. For the Hydrogen atom, the smooth approximations to the Coulomb potential are more accurate for higher angular momentum states. The transferability of the model potentials from an attractive interaction (Hydrogen atom) to a repulsive one (Harmonium and the uniform electron gas) is discussed. I. PHILOSOPHYHow feasible is it to find a model for the Coulomb interaction that is easier to evaluate but still reproduces key properties of the physical interaction? A logical starting point is a system with no interaction, as in KohnSham density functional theory (DFT) [1]. The KohnSham (KS) approximation starts from a non-interacting system, described as the sum of the individual electrons' contributions to the energy:In order to ameliorate the effect of omitting the Coulomb repulsion between the electrons, an extra term, the exchange-correlation functional E xc [ρ], is introduced into the energy expression. For a given external potential v(r) In principle, the KS solutions are exact when E xc is exact, and the KS orbitals yield the exact density of the system with N electrons in the external potential v(r). The accuracy of KS density functional approximations (DFA) depends on the approximation one uses for E xc .The simplest approximation is the local density approximation (LDA) [3][4][5]. In LDA it is assumed that the exchange-correlation functional is local,where the exchange-correlation energy density xc (ρ(r)) at r is taken from the uniform electron gas with density ρ(r).To accurately recover the effect of omitting the interaction between the electrons, one constructs an adiabatic connection that links the KS non-interacting system with the physical interacting system. Traditionally, this adiabatic connection is written as a function of the strength of the interaction, using a simple multiplicative factor λ arXiv:1610.08730v1 [physics.chem-ph]
The accuracy of any observable derived from multi-scale simulations based on Frozen-Density Embedding Theory (FDET) is affected by two inseparable factors: {\it i}) the approximation for the ${E}_{xcT}^{nad}[\rho_A,\rho_B]$ <p>component of the FDET energy functional and {\it ii}) the choice of the density $\rho_B(\mathbf{r})$</p> <p>for which the FDET eigenvalue equation for the embedded wavefunction is solved.</p> <p>A procedure is proposed to estimate the relative the significance of these two factors.</p> <p>Numerical examples are given for four weakly bound intermolecular complexes.</p> <p>It is shown that the violation of the non-negativity condition is the principal source of error in the FDET energy</p> <p>if $\rho_B$ is the density of the isolated environment, i.e. is generated without taking into account the interactions with the embedded species.</p> <p>Reduction of both the magnitude of the violation of the non-negativity condition and the error in the FDET energy can be pragmatically achieved by means of the explicit treatment of the electronic polarisation of the environment.
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