We investigated dibenzo [a,h]thianthrene molecules adsorbed on ultrathin layers of NaCl using a combined low-temperature scanning tunneling and atomic force microscope. Two stable configurations exist corresponding to different isomers of free nonplanar molecules. By means of excitations from inelastic electron tunneling we can switch between both configurations. Atomic force microscopy with submolecular resolution allows unambiguous determination of the molecular geometry, and the pathway of the interconversion of the isomers. Our investigations also shed new light on contrast mechanisms in scanning tunneling microscopy. DOI: 10.1103/PhysRevLett.108.086101 PACS numbers: 68.43.Fg, 68.37.Ef, 68.37.Ps, 82.37.Gk Recently, the chemical structure of a pentacene molecule has been visualized by means of noncontact atomic force microscopy (AFM) [1]. Shortly after, this method assisted in identifying the structure of an organic molecule [2]. In conjunction with the capability of scanning tunneling microscopy (STM) to perform orbital imaging on ultrathin insulating films [3], it is possible to gain independent and complementary information of the molecular as well as of the adsorption geometry, but also of the electronic structure of individual molecules.Unambiguous identification of configurational changes of adsorbed molecules is a challenging task by means of STM alone [4], probing the local density of states rather than geometry. Usually, additional techniques such as nearedge x-ray adsorption fine structure measurements have to be employed [5,6].In this Letter, we present combined STM and AFM experiments of dibenzo[a,h]thianthrene (DBTH) molecules adsorbed on ultrathin layers of sodium chloride. We demonstrate controlled switching between two different molecular configurations by means of inelastic excitations. AFM images with submolecular resolution directly reveal the configurational changes. Stereochemistry could be utilized to determine their interconversion pathway in detail.All AFM measurements were carried out in a homebuilt combined STM and AFM operating in an ultrahigh vacuum (p < 10 À10 mbar) at T ¼ 5 K. The AFM, based on the qPlus tuning fork design (spring constant k 0 % 1:8 Â 10 3 N m À1 , resonance frequency f 0 ¼ 26 057 Hz, quality factor Q % 10 4 ) [7], was operated in the frequency modulation mode [8]. Sub-Å ngstrom oscillation amplitudes have been used to maximize the lateral resolution [9]. Some of the STM measurements ( Figs. 1 and 2) were performed in a similar modified commercial STM from SPS-CreaTec. The bias voltage V was applied to the sample.Sodium chloride was evaporated onto clean Cu(111) single crystals at sample temperatures of about 280 K [10]. All experiments were carried out on a double layer, and we denote this substrate system as NaClð2MLÞ= Cuð111Þ. The DBTH molecules were synthesized as described previously [11].Low coverages of CO (for tip functionalization) and DBTH molecules were adsorbed at sample temperatures below 10 K. Following a recently developed technique, the tip ha...

We study a thermally activated on-surface planarization reaction by a detailed analysis of the reactant and reaction products from atomically resolved atomic force microscopy (AFM) images and spectroscopy. The three-dimensional (3D) structure of the reactant, a helical diphenanthrene derivative, requires going beyond constant-height imaging. The characterization in three dimensions is enabled by acquisition and analysis of the AFM signal in a 3D data set. This way, the structure and geometry of nonplanar molecules as well as their reaction products on terraces and at step edges can be determined.

The coordination chemistry of the new curcuminoid ligand, 1,7-(di-9-anthracene-1,6-heptadiene-3,5-dione), abbreviated 9Accm has been studied, resulting in two new copper-9Accm compounds. Compound 1, [Cu(phen)Cl(9Accm)], was synthesized by reacting 9Accm with [Cu(phen)Cl(2)] in a 1:1 ratio (M:L) and compound 2, [Cu(9Accm)(2)], was prepared from Cu(OAc)(2) and 9Accm (1:2). UV-vis, electron paramagnetic resonance (EPR), and superconducting quantum interference device (SQUID) measurements were some of the techniques employed to portray these species; studies on single crystals of free 9Accm, [Cu(phen)Cl(9Accm)] and [Cu(9Accm)(2)(py)] provided detailed structural information about compounds 1 and 2·py, being the first two copper-curcuminoids crystallographically described. In addition the antitumor activity of the new compounds was studied and compared with free 9Accm for a number of human tumor cells. To provide more insight on the mode of action of these compounds under biological conditions, additional experiments were accomplished, including studies on the nature of their interactions with calf thymus DNA by UV-vis titration and Circular Dichroism. These experiments together with DNA-binding studies indicate electrostatic interactions between some of these species and the double helix, pointing out the weak nature of the interaction of the compounds with CT-DNA. The intrinsic fluorescence of the free ligand and both copper compounds provided valuable information over the cellular process and therefore, fluorescence microscopy studies were performed using a human osteosarcoma cell line. Studies in vitro using this technique suggest that the action of these molecules seems to occur outside the nuclei.

Recently, we reported on the bistable configurational switching of dibenzo[a,h]thianthrene (DBTH) molecules adsorbed on NaCl using combined low‐temperature scanning tunneling and atomic force microscopy (STM/AFM). Here, we discuss the intra‐molecular contrast in AFM images of the molecules as a function of the tip–molecule distance. Our experiments show that ridges in the frequency shift do not necessarily correlate with chemical bonds in this case of a non‐planar molecule. To explain this finding we compare images acquired at different tip–molecule distances to the calculated electron density of the molecules obtained from density functional theory calculations (DFT). In addition, we analyze the probability of finding different configurations after adsorption onto the surface. DBTH molecules in two configurations probed by a CO‐functionalized tip. Insets show AFM (left) and STM (right) images of a U molecule.