Bioacoustic assessments of species richness are rapidly becoming attainable, but uncertainty regarding the optimal acoustic survey design remains. Selecting the duration of recording and the number of recording units are critical decisions, and we used both simulated and empirical data to quantify the trade‐offs those choices present. We evaluated the performance of 30 hypothetical acoustic survey designs (e.g. continuous recording, every other 5 min, etc.). Simulated bird species' (n ≤ 60) abundance across the study area, probability of daily availability and time‐dependent probability of vocal activity varied randomly within ranges of realistic values. Field data, collected in central New York, USA (747 hr) and in the northern Sierra Nevada, USA (1,090 hr), was analysed with a novel machine‐learning algorithm, BirdNET. All three datasets were subsampled at 5‐min intervals, observed species richness was compared across survey designs, and detection probability was calculated for each species. Observed species richness increased with survey coverage (number of recording units) and with recording duration in all three datasets. The impact of differences in survey coverage decreased as recording duration decreased. Species' detection probabilities were negatively affected by reducing the number of days of recording and by reducing the daily recording duration. The more rare species a community had, the more species richness was underestimated as survey coverage decreased. Rarefaction curves indicated that increasing recording time has diminishing marginal utility but that the asymptote varies among communities. The cost per species observed decreased with increasing recording duration. Discontinuous and reduced‐coverage sampling may still yield fairly accurate assessments of biodiversity but reducing recording duration or coverage will result in different species remaining undetected. Whether the performance of a study design is ‘good’ or ‘bad’ depends on researchers' constraints and scientific questions to be answered. More hardware and longer recording durations are not always better, but we caution researchers against doing the bare minimum required for their present needs without pressing financial reasons to do so.
Recent bioacoustic advances have facilitated large‐scale population monitoring for acoustically active species. Animal sounds, however, can of information that is underutilized in typical approaches to passive acoustic monitoring (PAM) that treat sounds simply as detections. We developed 3 methods of extracting additional ecological detail from acoustic data that are applicable to a broad range of acoustically active species. We conducted landscape‐scale passive acoustic surveys of a declining owl species and an invasive congeneric competitor in California. We then used sex‐specific vocalization frequency to inform multistate occupancy models; call rates at occupied sites to characterize interactions with interspecific competitors and assess habitat quality; and a flexible multivariate approach to differentiate individuals based on vocal characteristics. The multistate occupancy models yielded novel estimates of breeding status occupancy rates that were more robust to false detections and captured known habitat associations more consistently than single‐state occupancy models agnostic to sex. Call rate was related to the presence of a competitor but not habitat quality and thus could constitute a useful behavioral metric for interactions that are challenging to detect in an occupancy framework. Quantifying multivariate distance between groups of vocalizations provided a novel quantitative means of discriminating individuals with ≥20 vocalizations and a flexible tool for balancing type I and II errors. Therefore, it appears possible to estimate site turnover and demographic rates, rather than just occupancy metrics, in PAM programs. Our methods can be applied individually or in concert and are likely generalizable to many acoustically active species. As such, they are opportunities to improve inferences from PAM data and thus benefit conservation.
1. Passive acoustic monitoring (PAM) has emerged as a transformative tool for applied ecology, conservation and biodiversity monitoring, but its potential contribution to fundamental ecology is less often discussed, and fundamental PAM studies tend to be descriptive, rather than mechanistic.2. Here, we chart the most promising directions for ecologists wishing to use the suite of currently available acoustic methods to address long-standing fundamental questions in ecology and explore new avenues of research. In both terrestrial and aquatic habitats, PAM provides an opportunity to ask questions across multiple spatial scales and at fine temporal resolution, and to capture phenomena or species that are difficult to observe. In combination with traditional approaches to data collection, PAM could release ecologists from myriad limitations that have, at times, precluded mechanistic understanding.3. We discuss several case studies to demonstrate the potential contribution of PAM to biodiversity estimation, population trend analysis, assessing climate change impacts on phenology and distribution, and understanding disturbance and recovery dynamics. We also highlight what is on the horizon for PAM, in terms of near-future technological and methodological developments that have the potential to provide advances in coming years.4. Overall, we illustrate how ecologists can harness the power of PAM to address fundamental ecological questions in an era of ecology no longer characterised by data limitation.Recent developments in data acquisition, storage and processing have led to Passive acoustic monitoring (PAM; Box 1) approaches being increasingly adopted for a wide array of ecological applications and conservation management (
Biological invasions are most practical to manage when invasive species population densities are low. Despite a potentially narrow window of opportunity for efficient management, managers tend to delay intervention because the cost of prompt action is often high and resources are limited. The Barred Owl (Strix varia) invaded and colonized the entire range of the Northern Spotted Owl (S. occidentalis caurina), but insufficient population data contributed to delays in action until the Barred Owl posed an existential threat to the Spotted Owl. The leading edge of the Barred Owl expansion has since reached the Sierra Nevada, the core range of the California Spotted Owl (S. o. occidentalis). We conducted passive acoustic surveys within 400-ha grid cells across ~6,200 km2 in the northern Sierra Nevada and detected a 2.6-fold increase in Barred Owl site occupancy between 2017 and 2018, from 0.082 (85% confidence interval: 0.045–0.12) to 0.21 (0.14–0.28). The probability of Barred Owl site colonization increased with the amount of older forest, suggesting that Barred Owls are first occupying the preferred habitat of Spotted Owls. GPS-tagged Barred Owls (n = 10) generally displayed seasonal and interannual site fidelity over territories averaging 411 ha (range: 150–513 ha), suggesting that our occupancy estimates were not substantially upwardly biased by “double counting” individuals whose territories spanned multiple grid cells. Given the Barred Owl’s demonstrated threat to the Northern Spotted Owl, we believe our findings advise the Precautionary Principle, which posits that management actions such as invasive species removal should be taken despite uncertainties about, for example, true rates of population growth if the cost of inaction is high. In this case, initiating Barred Owl removals in the Sierra Nevada before the population grows further will likely make such action more cost-effective and more humane than if it is delayed. It could also prevent the extirpation of the California Spotted Owl from its core range.
The role of cannibalism in crayfish populations is not well understood, despite being a potentially key density-dependent process underpinning population dynamics. We studied the incidence of cannibalism in an introduced signal crayfish Pacifastacus leniusculus population in a Scottish lowland river in September 2014. Animals were sampled using six different sampling techniques simultaneously, revealing variable densities and size distributions across the site. Cannibalism prevalence was estimated by analysing the gut contents of crayfish >20 mm CL for the presence of crayfish fragments, which was found to be 20% of dissected individuals. When seeking evidence of relationships between the sizes of cannibals and ‘prey’, the density of conspecifics <56% the size of a dissected individual yielded the best fit. The relationship between cannibalism probability and crayfish size and density was equally well described by three different metrics of crayfish density. Cannibalism increased with crayfish size and density but did not vary according to sex. These results suggest that large P. leniusculus frequently cannibalize smaller (prey) conspecifics, and that the probability of cannibalism is dependent upon the relative size of cannibal-to-prey and the density of the smaller crayfish. We suggest that removing large individuals, as targeted by many traditional removal techniques, may lead to reduced cannibalism and therefore a compensatory increase in juvenile survival.
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