In this research-based experiment, students are introduced to the interdisciplinary field of archaeological chemistry by extracting and analyzing lipid residues absorbed in pottery. Reproduction archaeological pottery sherds are prepared by soaking ceramic fragments in individual or combinations of vegetable oils. Students crush and extract the absorbed residues, transesterify the recovered lipids to fatty acid methyl esters, and analyze the product by GC or GC/MS. Recovered residues are characterized by analysis of the major fatty acid peaks, as identified using reference standards or mass spectral databases. An archaeological context that links the sherds to the Minoan civilization is provided to students and must be considered to correctly identify the absorbed residue(s). The laboratory has been used in a topical archaeological instrumentation course that has attracted second to fourth year students majoring in chemistry, biochemistry, and anthropology, and museum studies minors. Pedagogically, the laboratory introduces students to techniques currently used in the field of archaeological chemistry while reinforcing fundamental concepts in sample isolation and preparation, derivatization, gas chromatography, mass spectrometry, and multicomponent sample analysis.
Num1 is a multifunctional protein that both tethers mitochondria to the plasma membrane and anchors dynein to the cell cortex during nuclear inheritance. Previous work has examined the impact loss of Num1-based mitochondrial tethering has on dynein function in Saccharomyces cerevisiae; here, we elucidate its impact on mitochondrial function. We find that like mitochondria, Num1 is regulated by changes in metabolic state, with the protein levels and cortical distribution of Num1 differing between fermentative and respiratory growth conditions. In cells lacking Num1, we observe a reproducible respiratory growth defect, suggesting a role for Num1 in not only maintaining mitochondrial morphology, but also function. A structure-function approach revealed that, unexpectedly, Num1-mediated cortical dynein anchoring is important for normal growth under respiratory conditions. The severe respiratory growth defect in Δnum1 cells is not specifically due to dynein's canonical function in nuclear migration but is dependent on the presence of dynein, as deletion of DYN1 in Δnum1 cells partially rescues respiratory growth. We hypothesize that misregulated dynein present in cells that lack Num1 negatively impacts mitochondrial function resulting in defects in respiratory growth.
Mitochondrial division is critical for maintenance of mitochondrial morphology and cellular homeostasis. Previous work has suggested that the mitochondria-ER-cortex anchor (MECA), a tripartite membrane contact site between mitochondria, the ER, and the plasma membrane, is involved in mitochondrial division. However, its role is poorly understood. We developed a system to control MECA formation and depletion, which allowed us to investigate the relationship between MECA-mediated contact sites and mitochondrial division. Num1 is the protein that mediates mitochondria-ER-plasma membrane tethering at MECA sites. Using both rapamycin-inducible dimerization and auxin-inducible degradation components coupled with Num1, we developed systems to temporally control the formation and depletion of the native contact site. Additionally, we designed a regulatable Num1-independant mitochondria-PM tether. We found that mitochondria-PM tethering alone is not sufficient to rescue mitochondrial division and that a specific feature of Num1-mediated tethering is required. This study demonstrates the utility of systems that regulate contact site formation and depletion in studying the biological functions of membrane contact sites.
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