Studies reveal that it is possible to design a palladium(II)-containing porphyrin to bind exclusively by intercalation to double-stranded DNA while simultaneously enhancing the ability to sensitize the formation of singlet oxygen. The comparisons revolve around the cations [5,10,15,20-tetra(N-methylpyridinium-4-yl)porphyrin]palladium(II), or Pd(T4), and [5,15-di(N-methylpyridinium-4-yl)porphyrin]palladium(II), or Pd(tD4), in conjunction with A═T and G≡C rich DNA binding sequences. Methods employed include X-ray crystallography of the ligands as well as absorbance, circular dichroism, and emission spectroscopies of the adducts and the emission from singlet oxygen in solution. In the case of the bulky Pd(T4) system, external binding is almost as effective as intercalation in slowing the rate of oxygen-induced quenching of the porphyrin's triplet excited state. The fractional efficiency of quenching by oxygen nevertheless approaches 1 for intercalated forms of Pd(tD4), because of intrinsically long triplet lifetimes. The intensity of the sensitized, steady-state emission signal varies with the system and depends on many factors, but the Pd(tD4) system is impressive. Intercalated forms of Pd(tD4) produce higher sensitized emission yields than Pd(T4) is capable of in the absence of DNA.
Chemical
bonding in the triclinic phase of 1,3,5-triamino-2,4,6-trinitrobenzene
(TATB) has been analyzed based on the experimental electron density
derived from X-ray diffraction data obtained at 20 K. The results
have been compared with those from solid state theoretical calculations.
The total electron density has been analyzed in terms of the Quantum
Theory of Atoms in Molecules (QTAIM). Features of the covalent bonds
demonstrate the presence of multiple bonds of various order. Strong
intramolecular hydrogen bonds and weaker intermolecular bonds within
the layer structure are characterized by the properties of their (3,
−1) critical points. Weaker interactions, predominantly O···O,
between the layers have additionally been characterized. Integrated
atomic charges are also reported. The importance of correcting the
primary X-ray data for λ/2 contamination is discussed.
The intra- and intermolecular bonding in the known phase of dihydroxylammonium 5,5'-bistetrazole-1,1'-diolate, TKX-50, has been analyzed on the basis of the experimentally determined charge density distribution from high-resolution X-ray diffraction data obtained at 20 K. This was compared to the charge density obtained from DFT calculations with periodic boundary conditions using both direct calculations and derived structure factors. Results of topological analysis of the electron density corroborate that TKX-50 is best described as a layered structure linked primarily by a number of hydrogen bonds as well as by a variety of other interactions. Additional bonding interactions were identified, including a pair of equivalent 1,5-type intramolecular closed-shell interactions in the dianion. Refinement of anharmonic motion was shown to be essential for obtaining an adequate model, despite the low temperature of the study. Although generally unusual, the implementation of anharmonic refinement provided a significant improvement compared to harmonic refinement of both traditional and split-core multipole models.
The electron density distribution of [PPh][UF] was obtained from high-resolution X-ray diffraction data measured at 20 K. The electron density was modeled with an augmented Hansen-Coppens multipolar formalism. Topological analysis reveals that the U-F bond is of incipient covalent nature. Theoretical calculations add further support to the bonding description gleaned from the experimental model. The impact of the uranium anomalous dispersion terms on the refinement is also discussed.
Aluminum halide, alkoxide and amide complexes 2-6 of the form (N,N)AlX2-nYn (n = 0, 1 and (N,N) = 1,9-dimesityl-5-phenyldipyrromethene (1)) were synthesized and characterized by NMR spectroscopy and X-ray crystallography. The in situ generated lithium salt of dipyrromethene 1 was reacted with AlX3 to afford aluminum halide complexes (N,N)AlX2 (X = Cl (2), I (3)) which were isolated as dichroic crystals. Salt metathesis reactions were employed to produce alkoxide complexes (N,N)Al(Cl)(O(t)Bu) (4) and (N,N)Al(O(t)Bu)2 (5) from compound 2. The dimethylamide complex (N,N)Al(NMe2)2 (6) was prepared by reaction of dipyrromethene 1 with [Al(NMe2)3]2. Crystallographic data revealed that the dipyrromethene is non-planar when bulky coligands are present as in compounds 3-6, while in the dichloride complex 2 the dipyrromethene is planar. Halide complexes 2 and 3 reacted with adventitious moisture in toluene to afford crystalline acid-base adducts (N,N)H·HX, (X = Cl (7), I (8)), which adopted structures reminiscent of anion receptors. Alkoxide and dimethylamide complexes 5 and 6 were also applied as precatalysts for the ring-opening polymerization of ε-caprolactone and preliminary results are reported.
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