Much effort is currently concentrated on research devoted to biofunctional patterned surfaces, which constitute the fundament for the development of microarrays for high-throughput gene and protein analyses. DNA microarrays have proved very successful, [1] and the concept is in the process of being applied to protein arrays. [2] However, in contrast to DNA fragments, proteins are easily denatured in contact with solid supports, and robotic printing of proteins onto chemically reactive glass slides [3] will not necessarily be applicable as a generic protocol for the preparation of protein arrays. Supported phosphatidylcholine lipid bilayers have emerged as interesting candidate substrates for protein chips, since they efficiently reduce nonspecific protein adsorption [4, 5] and, at the same time, allow different strategies for protein immobilization with biospecific water, desalted with a NAP5 column (Amersham Pharmacia, USA) according to manufacturer's protocols, and stored as working stock solutions at À 20 8C until use. Epoxy-derivatized slides were prepared from plain glass slides (Sigma, USA) as previously described. [9] Nhydroxysuccinimide slides were also used to spot the proteins but consistently gave inferior results. Proteins were prepared in NaHCO 3 buffer (0.1 M, pH 9) and arrayed on epoxy slides with a spacing of 180 mm between the spots by using an statistical microarray analysis arrayer (Engineering Services Inc., Ontario, Canada). After a 2-hour incubation period the slides were either used immediately, or stored for future use at 4 8C. The slides, if stored, were typically used within 48 h of printing.Unless otherwise indicated, probing and reactions on slides were performed as follows: Before use, the slides were quenched by treatment with phosphate-buffered saline (PBS) and glycine (0.5 M) on a shaker for 10 min. The slides were blocked with PBS, glycine (0.5 M), and bovine serum albumin (BSA; 1 % w/v) for 20 min, then washed with distilled water and air dried. The labeled probe was then applied: a mixture containing the probe (2 mM) was prepared by adding stock probe solution (0.5 mL, 200 mM) to tris(hydroxymethyl)aminomethane (Tris) buffer (49 mL, 50 mM, pH 8), and BSA (0.5 mL, 1 % w/v). The resulting mixture was applied to each slide by the coverslip method [9] and incubated for 30 min in the dark. The excess probe was washed off after incubation with distilled water, and the slides were subsequently washed with PBS that contained Tween (0.2 % v/v) for 15 minutes on a shaker. The slides were then washed with distilled water, air dried, and scanned with an ArrayWorx microarray scanner (Applied Precision, USA) at 548/595 nm. For the PMSF experiment, each slide was first incubated with freshly prepared PMSF (50 mL, 1 mM in 50 mM Tris, pH 8) for 30 minutes, rinsed extensively with distilled water to remove any free residual PMSF, and screened with FP-Cy3. The inhibition experiments were identical to the probe ± enzyme reactions, except that varying concentrations of trypsin inhibitor (original...