Understanding the reproductive microhabitat requirements of keystone species such as the gravel mound nesting bluehead chub Nocomis leptocephalus can be useful for whole-community management. Nocomis have been shown to be microhabitat specialists, but no study has accounted for interannual variability in microhabitat use or for the possibility that substrate choices are constrained by mouth size. Our goals were to quantify the spawning microhabitat requirements of bluehead chub in the North Fork Roanoke River, Virginia, USA. Specifically, we sought to (1) account for gape limitation of nesting chubs when quantifying substrate size preference and (2) to examine interannual variability in their nesting microhabitat preferences. In June 2012 and 2013, we measured pebbles on chub nests and determined the gape limit as the largest measured pebble. With the gape limit as a ceiling for measurable particles, we compared substrate used by chubs to randomly selected particles adjacent to each nest. Depth and velocity were also measured at nests during both years and compared to random points near nests. Patterns in microhabitat selection differed between years. Chubs exhibited substrate size preference in 2012, but not 2013. The mean size difference in 2012 was approximately 3 mm but we do not consider this biologically meaningful. This stands in contrast with other studies showing large mean differences in preferred and available substrate. We suggest that the gape limitation of adult male Nocomis imposes a restriction on usable nesting substrate, causing observed significant differences between preferred and available substrate sizes. Current velocities used by chubs were significantly slower than paired measurements in 2013, but did not differ in 2012; depth preference did not differ between years. Differences in velocity preference likely represent adjustment to the above-average instream flow conditions of 2013. This study demonstrates the importance of examining interannual variability in fish spawning habitat requirements.