Self-propelled bacteria are marvels of nature with a potential to power dynamic materials and microsystems of the future. The challenge is in commanding their chaotic behavior. By dispersing swimming Bacillus subtilis in a liquid-crystalline environment with spatiallyvarying orientation of the anisotropy axis, we demonstrate control over the distribution of bacteria, geometry and polarity of their trajectories. Bacteria recognize subtle differences in liquid crystal deformations, engaging in bipolar swimming in regions of pure splay and bend but switching to unipolar swimming in mixed splay-bend regions. They differentiate topological defects, heading towards defects of positive topological charge and avoiding negative charges. Sensitivity of bacteria to pre-imposed orientational patterns represents a new facet of the interplay between hydrodynamics and topology of active matter.One Sentence Summary: Patterned orientational order controls concentration, trajectories and flows of swimming bacteria in a liquid crystal.

A plasmonic photopatterning technique is proposed and demonstrated for aligning the molecular orientation in liquid crystals (LCs) in patterns with designer complexity. Using plasmonic metamasks in which target molecular directors are encoded, LC alignments of arbitrary planar patterns can be achieved in a repeatable and scalable fashion withunprecedentedly high spatial resolution and high throughput.

Electrically controlled dynamics of fluids and particles at microscales is a fascinating area of research with applications ranging from microfluidics and sensing to sorting of biomolecules. The driving mechanisms are electric forces acting on spatially separated charges in an isotropic medium such as water. Here, we demonstrate that anisotropic conductivity of liquid crystals enables new mechanism of highly efficient electro-osmosis rooted in space charging of regions with distorted orientation. The electric field acts on these distortion-separated charges to induce liquid crystal-enabled electro-osmosis. Their velocities grow with the square of the field, which allows one to use an alternating current field to drive steady flows and to avoid electrode damage. Ionic currents in liquid crystals that have been traditionally considered as an undesirable feature in displays, offer a broad platform for versatile applications such as liquid crystal-enabled electrokinetics, micropumping and mixing.

Transport of fluids and particles at the microscale is an important theme both in fundamental and applied science. One of the most successful approaches is to use an electric field, which requires the system to carry or induce electric charges. We describe a versatile approach to generate electrokinetic flows by using a liquid crystal (LC) with surface-patterned molecular orientation as an electrolyte. The surface patterning is produced by photo-alignment.In the presence of an electric field, the spatially varying orientation induces space charges that trigger flows of the LC. The active patterned LC electrolyte converts the electric energy into the LC flows and transport of embedded particles of any type (fluid, solid, gaseous) along a predesigned trajectory, posing no limitation on the electric nature (charge, polarizability) of these particles and interfaces. The patterned LC electrolyte exhibits a quadratic field dependence of the flow velocities; it induces persistent vortices of controllable rotation speed and direction that are quintessential for micro-and nanoscale mixing applications.

Active matter exhibits remarkable collective behavior in which flows, continuously generated by active particles, are intertwined with the orientational order of these particles. The relationship remains poorly understood as the activity and order are difficult to control independently. Here we demonstrate important facets of this interplay by exploring dynamics of swimming bacteria in a liquid crystalline environment with pre-designed periodic splay and bend in molecular orientation. The bacteria are expelled from the bend regions and condense into polar jets that propagate and transport cargo unidirectionally along the splay regions. The bacterial jets remain stable even when the local concentration exceeds the threshold of bending instability in a non-patterned system. Collective polar propulsion and different role of bend and splay are explained by an advection-diffusion model and by numerical simulations that treat the system as a two-phase active nematic. The ability of prepatterned liquid crystalline medium to streamline the chaotic movements of swimming bacteria into polar jets that can carry cargo along a predesigned trajectory opens the door for potential applications in cell sorting, microscale delivery and soft microrobotics.