Background: It is unknown to what extent the microbiome of preterm infants is influenced by hospital regimens including the use of different probiotics when it comes to the prevention of necrotizing enterocolitis (NEC). Methods: Prospective controlled multicenter cohort study including very low birth weight infants from three neonatal intensive care units (NICUs) between October 2015 and March 2017. During this time span, stool was sampled every other day during the first two weeks and samples were subjected to amplicon-based microbiome analyses. Out of these, seventeen negative controls were processed (German Registry of Clinical Trials (No.: DRKS00009290)). Results: The groups (3 × 18 infants) showed no statistically significant difference regarding gestational age, birth weight, APGAR scores and oxygen demand. 2029 different taxa were detected, including Enterococcus and Staphylococcus, as well as the probiotic genera Lactobacillus and Bifidobacterium predominating. The bacterial load was found to increase earlier on when probiotics were used. Without probiotics administration, Lactobacillus and Bifidobacterium contributed only marginally to the fecal microbiome. Some infants did not respond to probiotic administration. The samples from all centers participating reached a very similar diversity after two weeks while the microbiome samples from all three centers clustered significantly yet varied from each other. Conclusion: Probiotics proved to be safe and initiated an earlier increase of bacterial load (with marked individual divergences), which might play a crucial role in the prevention of neonatal morbidities. Meconium was found not to be free of bacterial DNA, and oral antibiotics did not influence the fecal microbiome development negatively, and hospital regimes led to a center-specific, distinct cluster formation.
Preterm infants with very low birthweight are at serious risk for necrotizing enterocolitis. To functionally analyse the principles of three successful preventive NEC regimens, we characterize fecal samples of 55 infants (<1500 g, n = 383, female = 22) longitudinally (two weeks) with respect to gut microbiome profiles (bacteria, archaea, fungi, viruses; targeted 16S rRNA gene sequencing and shotgun metagenomics), microbial function, virulence factors, antibiotic resistances and metabolic profiles, including human milk oligosaccharides (HMOs) and short-chain fatty acids (German Registry of Clinical Trials, No.: DRKS00009290). Regimens including probiotic Bifidobacterium longum subsp. infantis NCDO 2203 supplementation affect microbiome development globally, pointing toward the genomic potential to convert HMOs. Engraftment of NCDO 2203 is associated with a substantial reduction of microbiome-associated antibiotic resistance as compared to regimens using probiotic Lactobacillus rhamnosus LCR 35 or no supplementation. Crucially, the beneficial effects of Bifidobacterium longum subsp. infantis NCDO 2203 supplementation depends on simultaneous feeding with HMOs. We demonstrate that preventive regimens have the highest impact on development and maturation of the gastrointestinal microbiome, enabling the establishment of a resilient microbial ecosystem that reduces pathogenic threats in at-risk preterm infants.
The planet Mars is a primary target in the search for extraterrestrial life. Metabolic experiments carried out during the Viking Mission (1976Mission ( -1982 designed to detect respiration and photosynthesis provided inconclusive results, and one type of experiment (Labeled Release) seemed to be positive (Klein, 1977;Levin & Straat, 2016;Schulze-Makuch et al., 2015). Precisely, the Labeled Release experiment demonstrated that addition of radioactively-labeled organic medium to Martian soil resulted in the release of radioactive gas, which suggested that organic compounds were metabolized. Moreover, the breakdown of organic matter was ceased by temperature treatment capable of killing terrestrial microorganisms (Klein, 1977;Levin & Straat, 2016). The positive result of Labeled Release experiment was not confirmed by other experiments carried out during the Viking Mission-the Pyrolytic Release and the Gas Exchange experiments (Klein, 1977). Moreover, during the Viking Mission, no organic matter was found in samples of the Martian soil (Klein, 1977). Results from the Viking Mission have been debated further in the context of geochemical data provided by subsequent missions, especially that of the Phoenix Mars Lander ( 2008) and the Curiosity Rover (since 2012), but the question about the presence of life on Mars remains unanswered (Goetz Abstract The main goal of astrobiological studies is the search for life beyond Earth. Developing life detection methods requires test locations that have similar environmental conditions to extraterrestrial sites or that simply have low organism abundances. In this study, we describe dune sand of a low organic matter content (0.11%) collected from a national park frequented by few people. It is located in temperate zone. We hypothesized that dune sand is characterized by the low abundance of microorganisms and metabolic rates that could be compared to analogs of extraterrestrial environments like the Antarctic McMurdo Dry Valleys or the Atacama Desert. Measurements of CO 2 efflux and ATP concentration demonstrated that hydrating dune sand with sterile distilled water initiated a short period of substantial microbial metabolic activity that lasted from 4 to 5 days. The maximum CO 2 efflux was 100 mgCO 2 m −2 d −1 , which was low compared to values reported for sandy dunes, deserts and poor soils, including McMurdo Dry Valleys. Microscopic observations demonstrated that the abundance of prokaryotic microorganisms in the dune sand was low at roughly one million per cm 3 of sand and was comparable to the abundance reported from the Atacama Desert. The microbial communities in the dune sand were studied based on 16S rRNA gene analyses. The most prominent bacterial genera were Massilia and Bacillus. Study demonstrated that dune sand sampled from a national park area was as useful for testing life detection methods as are other well-established analogs of extraterrestrial environments.Plain Language Summary One of the main goals of contemporary science is the search for life beyond Earth....
Preterm infants with very low birthweight are at serious risk for necrotizing enterocolitis. To functionally analyse the principles of three successful preventive NEC regimens, we characterized faecal samples of 54 infants (< 1,500 g, n = 383) longitudinally (two weeks) with respect to gut microbiome profiles (bacteria, archaea, fungi, viruses), microbial function, virulence factors, antibiotic resistances and metabolic profiles, including human milk oligosaccharides (HMOs) and short-chain fatty acids. Probiotic Bifidobacterium longum ssp. infantis supplementation affected microbiome development globally, pointing toward the genomic potential to convert HMOs. Engraftment of Bifidobacterium substantially reduced microbiome-associated antibiotic resistance as compared to regimens using probiotic Lactobacillus rhamnosus or no supplementation. Crucially, the beneficial effects of Bifidobacterium supplementation depended on simultaneous feeding with HMOs. We demonstrate that preventive regimens have the highest impact on early maturation of the gastrointestinal microbiome, enabling the establishment of a resilient microbial ecosystem that reduces pathogenic threats in at-risk preterm infants.
Preterm infants with very low birthweight are at serious risk for necrotizing enterocolitis. To functionally analyse the principles of three successful preventive NEC regimens, we characterized faecal samples of 54 infants (< 1,500 g, n = 383) longitudinally (two weeks) with respect to gut microbiome profiles (bacteria, archaea, fungi, viruses), microbial function, virulence factors, antibiotic resistances and metabolic profiles, including human milk oligosaccharides (HMOs) and short-chain fatty acids. Probiotic Bifidobacterium longum ssp. infantis supplementation affected microbiome development globally, pointing toward the genomic potential to convert HMOs. Engraftment of Bifidobacterium substantially reduced microbiome-associated antibiotic resistance as compared to regimens using probiotic Lactobacillus rhamnosus or no supplementation. Crucially, the beneficial effects of Bifidobacterium supplementation depended on simultaneous feeding with HMOs. We demonstrate that preventive regimens have the highest impact on early maturation of the gastrointestinal microbiome, enabling the establishment of a resilient microbial ecosystem that reduces pathogenic threats in at-risk preterm infants.
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