Herein, we document changes in the Lake Michigan food web between 1970 and 2000 and identify the factors responsible for these changes. Control of sea lamprey (Petromyzon marinus) and alewife (Alosa pseudoharengus) populations in Lake Michigan, beginning in the 1950s and 1960s, had profound effects on the food web. Recoveries of lake whitefish (Coregonus clupeaformis) and burbot (Lota lota) populations, as well as the buildup of salmonine populations, were attributable, at least in part, to sea lamprey control. Based on our analyses, predation by salmonines was primarily responsible for the reduction in alewife abundance during the 1970s and early 1980s. In turn, the decrease in alewife abundance likely contributed to recoveries of deepwater sculpin (Myoxocephalus thompsoni), yellow perch (Perca flavescens), and burbot populations during the 1970s and 1980s. Decrease in the abundance of all three dominant benthic macroinvertebrate groups, including Diporeia, oligochaetes, and sphaeriids, during the 1980s in nearshore waters ([Formula: see text]50 m deep) of Lake Michigan, was attributable to a decrease in primary production linked to a decline in phosphorus loadings. Continued decrease in Diporeia abundance during the 1990s was associated with the zebra mussel (Dreissena polymorpha) invasion, but specific mechanisms for zebra mussels affecting Diporeia abundance remain unidentified.

We performed two controlled experiments to determine the amount of mass-dependent and mass-independent fractionation (MDF and MIF) of methylmercury (MeHg) during trophic transfer into fish. In Experiment 1, juvenile yellow perch (Perca flavescens) were raised in captivity on commercial food pellets and then their diet was either maintained on un-amended food pellets (0.1 µg/g MeHg), or was switched to food pellets with 1.0 µg/g or 4.0 µg/g of added MeHg, for a period of 2 months. The difference in δ202Hg (MDF) and Δ199Hg (MIF) between fish tissues and food pellets with added MeHg were within the analytical uncertainty (δ202Hg; 0.07 ‰, Δ199Hg; 0.06 ‰) indicating no isotope fractionation. In Experiment 2, lake trout (Salvelinus namaycush) were raised in captivity on food pellets, and then shifted to a diet of bloater (Coregonus hoyi) for 6 months. The δ202Hg and Δ199Hg of the lake trout equaled the isotopic composition of the bloater after 6 months, reflecting re-equilibration of the Hg isotopic composition of the fish to new food sources and a lack of isotope fractionation during trophic transfer. We suggest that the stable Hg isotope ratios in fish can be used to trace environmental sources of Hg in aquatic ecosystems.

Although burbot (Lota lota Gadidae) are widespread and abundant throughout much of their natural range, there are many populations that have been extirpated, endangered or are in serious decline. Due in part to the species’ lack of popularity as a game and commercial fish, few regions consider burbot in management plans. We review the worldwide population status of burbot and synthesize reasons why some burbot populations are endangered or declining, some burbot populations have recovered and some burbot populations do not recover despite management measures. Burbot have been extirpated in much of Western Europe and the United Kingdom and are threatened or endangered in much of North America and Eurasia. Pollution and habitat change, particularly the effects of dams, appear to be the main causes for declines in riverine burbot populations. Pollution and the adverse effects of invasive species appear to be the main reasons for declines in lacustrine populations. Warmer water temperatures, due either to discharge from dams or climate change, have been noted in declining burbot populations at the southern extent of their range. Currently, fishing pressure does not appear to be limiting burbot populations world‐wide. We suggest mitigation measures for burbot population recovery, particularly those impacted by dams and invasive species.

Bioenergetics modeling is a widely used tool in fisheries management and research. Although popular, currently available software (i.e., Fish Bioenergetics 3.0) has not been updated in over 20 years and is incompatible with newer operating systems (i.e., 64‐bit). Moreover, since the release of Fish Bioenergetics 3.0 in 1997, the number of published bioenergetics models has increased appreciably from 56 to 105 models representing 73 species. In this article, we provide an overview of Fish Bioenergetics 4.0 (FB4), a newly developed modeling application that consists of a graphical user interface (Shiny by RStudio) combined with a modeling package used in the R computing environment. While including the same capabilities as previous versions, Fish Bioenergetics 4.0 allows for timely updates and bug fixes and can be continuously improved based on feedback from users. In addition, users can add new or modified parameter sets for additional species and formulate and incorporate modifications such as habitat‐dependent functions (e.g., dissolved oxygen, salinity) that are not part of the default package. We hope that advances in the new modeling platform will attract a broad range of users while facilitating continued application of bioenergetics modeling to a wide spectrum of questions in fish biology, ecology, and management.

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Growth of alewives Alosa pseudoharengus and lake whitefish Coregonus clupeaformis has declined since the arrival and spread of dreissenid mussels in Lakes Michigan and Huron. Alewives are the main forage for the salmonids in Lake Michigan, and lake whitefish are the most important commercial species in both lakes. Bioenergetics modeling was used to determine consumption by the average individual fish before and after the dreissenid invasion and to provide insight into the invasion's effects on fish growth and food web dynamics. Alewives feed on both zooplankton and benthic macroinvertebrates, and lake whitefish are benthivores. Annual consumption of zooplankton by an average alewife in Lake Michigan was 37% lower and consumption of benthic macroinvertebrates (amphipods Diporeia spp., opossum shrimp Mysis relicta, and Chironomidae) was 19% lower during the postinvasion period (1995)(1996)(1997)(1998)(1999)(2000)(2001)(2002)(2003)(2004)(2005) than during the preinvasion period (1983)(1984)(1985)(1986)(1987)(1988)(1989)(1990)(1991)(1992)(1993)(1994). Reduced consumption by alewives corresponded with reduced alewife growth. In Lakes Michigan and Huron, consumption of nonmollusk macroinvertebrates (Diporeia spp., opossum shrimp, Chironomidae) by the average lake whitefish was 46-96% lower and consumption of mollusks (mainly dreissenids and gastropods) was 2-5 times greater during the postinvasion period than during the preinvasion period. Even though total food consumption by lake whitefish did not differ between the two periods in Lake Huron or the Southern Management Unit in Lake Michigan, postinvasion weight at age was at least 38% lower than preinvasion weight at age. Under the current postinvasion diet regime, consumption by lake whitefish would have to increase by up to 122% to achieve preinvasion growth rates.

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Ecosystem change often affects the structure of aquatic communities thereby regulating how much and by what pathways energy and critical nutrients flow through food webs. The availability of energy and essential nutrients to top predators such as seabirds that rely on resources near the water's surface will be affected by changes in pelagic prey abundance. Here, we present results from analysis of a 25-year data set documenting dietary change in a predatory seabird from the Laurentian Great Lakes. We reveal significant declines in trophic position and alterations in energy and nutrient flow over time. Temporal changes in seabird diet tracked decreases in pelagic prey fish abundance. As pelagic prey abundance declined, birds consumed less aquatic prey and more terrestrial food. This pattern was consistent across all five large lake ecosystems. Declines in prey fish abundance may have primarily been the result of predation by stocked piscivorous fishes, but other lake-specific factors were likely also important. Natural resource management activities can have unintended consequences for nontarget ecosystem components. Reductions in pelagic prey abundance have reduced the capacity of the Great Lakes to support the energetic requirements of surface-feeding seabirds. In an environment characterized by increasingly limited pelagic fish resources, they are being offered a Hobsonian choice: switch to less nutritious terrestrial prey or go hungry.