Achromobacter xylosoxidans is an aerobic nonfermentative Gram-negative rod considered an important emerging pathogen among cystic fibrosis (CF) patients worldwide and among immunocompromised patients. This increased prevalence remains unexplained, and to date no environmental reservoir has been identified. The aim of this study was to identify potential reservoirs of A. xylosoxidans in hospital, domestic, and outdoor environments and to compare the isolates with clinical ones. From 2011 to 2012, 339 samples were collected in Dijon's university hospital, in healthy volunteers' homes in the Dijon area, and in the outdoor environment in Burgundy (soil, water, mud, and plants). We designed a protocol to detect A. xylosoxidans in environmental samples based on a selective medium: MCXVAA (MacConkey agar supplemented with xylose, vancomycin, aztreonam, and amphotericin B). Susceptibility testing, genotypic analysis by pulsed-field gel electrophoresis, and bla OXA-114 sequencing were performed on the isolates. A total of 50 strains of A. xylosoxidans were detected in hospital (33 isolates), domestic (9 isolates), and outdoor (8 isolates) samples, mainly in hand washing sinks, showers, and water. Most of them were resistant to ciprofloxacin (49 strains). Genotypic analysis and bla OXA-114 sequencing revealed a wide diversity among the isolates, with 35 pulsotypes and 18 variants of oxacillinases. Interestingly, 10 isolates from hospital environment were clonally related to clinical isolates previously recovered from hospitalized patients, and one domestic isolate was identical to one recovered from a CF patient. These results indicate that A. xylosoxidans is commonly distributed in various environments and therefore that CF patients or immunocompromised patients are surrounded by these reservoirs.
Bulk magnetic susceptibility measurements on sedimentological samples from all geological periods have been used widely in the last two decades for correlations and as a proxy for sea‐level variations. This paper explores the link between magnetic susceptibility, depositional setting and environmental parameters. These environmental parameters include distal–proximal transects, microfacies successions and fourth‐order trends on different carbonate platform types (platform, ramp, carbonate mound or atoll) during different Devonian stages (Eifelian, Givetian and Frasnian). Average magnetic susceptibility values over a distal–proximal‐trending facies succession vary markedly with depositional setting. On carbonate platforms, average magnetic susceptibility generally increases towards the top of shallowing‐upward sequences. On a distal–proximal transect, average magnetic susceptibility is intermediate for the deepest facies, decreases for the reef belts and increases to a maximum in the back‐reef zone. In ramps and atolls, magnetic susceptibility trends clearly differ; average magnetic susceptibility generally decreases towards the top of shallowing‐upward sequences and is highest in the deepest facies. The strong relationship between magnetic susceptibility, facies and sequences implies a strong environmental influence. However, the different responses in the different platform types suggest that sea‐level changes leading to variation in detrital input is not the only parameter controlling average magnetic susceptibility values. Other primary or secondary processes also probably influenced magnetic mineral distribution. Primary processes such as carbonate production and water agitation during deposition are probably key factors. When carbonate production is high, the proportion of magnetic minerals is diluted and the magnetic susceptibility signal decreases. High water agitation during deposition will also selectively remove magnetic minerals and will lead to low average magnetic susceptibility values. These parameters explain the lowest values observed on the reef platform, inner ramp and atoll crown, which are all in areas characterized by higher carbonate production and greater water agitation during deposition. The lowest values observed in the lagoon inside the atoll crown can be related to detrital isolation by the atoll crown. However, other parameters such as biogenic magnetite production or diagenesis can also influence the magnetic signal. Diagenesis can change magnetism by creating or destroying magnetic minerals. However, the influence of diagenesis probably is linked strongly to the primary facies (permeability, amount of clay or organic matter) and probably enhanced the primary signal. The complexity of the signal gives rise to correlation problems between different depositional settings. Thus, while magnetic susceptibility has the potential to be an important correlation tool, the results of this investigation indicate that it cannot be used without consideration of sedimentary processes and ...
The major part of the Hanonet Formation is deposited on a mixed siliciclasticcarbonate detrital ramp, whereas the top is dominated by carbonate-rimmed shelf-related sedimentation. The transition corresponds roughly to the Eifelian-Givetian boundary. This work is based on two stratigraphic sections located in the southern part of the Dinant Synclinorium. Petrographic study leads to the definition of 11 microfacies, which demonstrate important sedimentological differences existing between the sections. A curve showing microfacies evolution is interpreted in terms of changing bathymetry. An environmental model depicts the lateral transition from a multiclinal carbonate ramp (to the east) to a forereef setting (to the west). Magnetic susceptibility was used to establish accurate stratigraphic correlations between the two sections. It also leads to an appreciation of the relative importance of eustatic sea-level change and local sedimentation rate. The combined interpretation of the microfacies curves and the magnetic susceptibility provides a new view of the sedimentary dynamics of the studied sections and, in a more general way, a better understanding of the processes responsible for magnetic susceptibility variations in carbonate rocks.
a b s t r a c t a r t i c l e i n f oKeywords: Frasnian Magnetic susceptibility Correlations Platforms and atolls Magnetic susceptibility (MS) measurements on carbonate rocks are considered as a proxy for impurities delivered to the carbonate environments. In the absence of strong climatic or tectonic variations, bulk MS values have been linked to sea level variations, because sea-level fall increases clastic supply and therefore increases in magnetic mineral deposition. In this paper we explore the relationship between the average magnitude of bulk MS, with shallowing-up sequences and facies evolution in different Devonian carbonate complexes. Similarities and differences between these parameters have been scrutinized in carbonate attached platform and detached platforms (mounds and/or atolls) from Belgium and Canada. In the carbonate attached platforms from Belgium and Canada, the MS patterns are directly related to depositional environment. Mean MS values increase from the most distal towards the most proximal facies and towards the top of the majority of fourth-order shallowing-up sequences. These trends are in agreement with theoretical background (MS increases with regression). In the Belgian detached platform, the average MS pattern generally shows an opposite behaviour to that observed in the attached carbonate platforms. Average MS decreases towards the most proximal facies and towards the top of a majority of the fourth-order shallowing-up sequences. This behaviour can be explained by the influence of sedimentary rate and water agitation during deposition. A high sedimentary rate will dilute the magnetic minerals in the atoll facies and the high water agitation during deposition may be expected to have prevented the deposition of the magnetic grains. So, the combination of these two effects will result in the observed low values in the atoll crown and lagoonal facies. In the Canadian detached platform, MS is mainly negative. This means that the limestones are very pure. The technique does not appear to be appropriate in these rocks. The variations of average MS behaviour by platform type can imply difficulties in correlating carbonates from different settings. A comparison of time equivalent mound and platform deposits shows that after an important regressive surface, the MS values are increasing for the platform deposits and decreasing for the mound. So MS evolution can be in complete opposition (caused by highly different sedimentary rates) in different depositional settings. The MS signal preserved in carbonate rocks is probably mainly related to 1) varying clastic supplies; 2) varying carbonate accumulation rates (dilution of the magnetic minerals by high carbonate production) and 3) potentially diagenesis.
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