The nucleotide sequence from the genome of Moraxella catarrhalis ATCC 43617 was annotated and used both to assess the metabolic capabilities and limitations of this bacterium and to design probes for a DNA microarray. An absence of gene products for utilization of exogenous carbohydrates was noteworthy and could be correlated with published phenotypic data. Gene products necessary for aerobic energy generation were present, as were a few gene products generally ascribed to anaerobic systems. Enzymes for synthesis of all amino acids except proline and arginine were present. M. catarrhalis DNA microarrays containing 70-mer oligonucleotide probes were designed from the genome-derived nucleotide sequence data. Analysis of total RNA extracted from M. catarrhalis ATCC 43617 cells grown under iron-replete and iron-restricted conditions was used to establish the utility of these DNA microarrays. These DNA microarrays were then used to analyze total RNA from M. catarrhalis cells grown in a continuous-flow biofilm system and in the planktonic state. The genes whose expression was most dramatically increased by growth in the biofilm state included those encoding a nitrate reductase, a nitrite reductase, and a nitric oxide reductase. Real-time reverse transcriptase PCR analysis was used to validate these DNA microarray results. These results indicate that growth of M. catarrhalis in a biofilm results in increased expression of gene products which can function not only in energy generation but also in resisting certain elements of the innate immune response.Moraxella catarrhalis is a gram-negative, unencapsulated bacterium that can colonize the mucosal surface of the human nasopharynx, most frequently in infants and very young children (22). When this organism traverses the eustachian tube in these very young individuals, it can cause otitis media (7). Alternatively, in colonized adults, M. catarrhalis gains access to the bronchi and there causes exacerbations of chronic obstructive pulmonary disease (48). This organism can also infrequently cause other types of infections (for reviews, see references 39 and 73).Information about the virulence mechanisms employed by this organism in the production of disease is still very limited, although a number of putative virulence factors have been identified, including proteins located in or attached to the outer membrane (1, 6, 9, 23, 24, 26, 32-34, 40, 44, 49, 51, 54, 57, 65, 71), as well as lipooligosaccharide (42, 59). Validation of the actual involvement of these different gene products in disease processes has been severely hindered by the lack of an appropriate animal model for M. catarrhalis disease (39). Similarly, little is known about how M. catarrhalis colonizes the nasopharynx, and while several M. catarrhalis adhesins which function in vitro have been identified (33,40,61,71), the relative importance of these macromolecules in the colonization process in vivo remains to be determined. Recent studies aimed at addressing this issue have included the use of reverse transcr...

Mutant analysis was used to identify Moraxella catarrhalis gene products necessary for biofilm development in a crystal violet-based assay involving 24-well tissue culture plates. The wild-type M. catarrhalis strains that formed the most extensive biofilms in this system proved to be refractory to transposon mutagenesis, so an M. catarrhalis strain was constructed that was both able to form biofilms in vitro and amenable to transposon mutagenesis. Chromosomal DNA from the biofilm-positive strain O46E was used to transform the biofilm-negative strain O35E; transformants able to form biofilms were identified and subjected to transposon-mediated mutagenesis. Biofilmnegative mutants of these transformants were shown to have a transposon insertion in the uspA1 gene. Nucleotide sequence analysis revealed that the biofilm-positive transformant T14 contained a hybrid O46E-O35E uspA1 gene, with the N-terminal 155 amino acids being derived from the O46E UspA1 protein. Transformant T14 was also shown to be unable to express the Hag protein, which normally extends from the surface of the M. catarrhalis cell. Introduction of a wild-type O35E hag gene into T14 eliminated its ability to form a biofilm. When the hybrid O46E-O35E uspA1 gene from T14 was used to replace the uspA1 gene of O35E, this transformant strain did not form a biofilm. However, inactivation of the hag gene did allow biofilm formation by strain O35E expressing the hybrid O46E-O35E uspA1 gene product. The Hag protein was shown to have an inhibitory or negative effect on biofilm formation by these M. catarrhalis strains in the crystal violet-based assay.Moraxella catarrhalis is an important cause of otitis media in infants and very young children (9, 21). In adults with chronic obstructive pulmonary disease, M. catarrhalis is known to be a significant cause of infectious exacerbations (28, 38). In addition, M. catarrhalis has been shown to be an infrequent cause of several other diseases including pneumonia and sinusitis (for a review, see reference 28).The ability of this organism to colonize the mucosal surface of the nasopharynx is key to its ability to cause disease in other anatomic regions, because this colonization event provides a foothold for M. catarrhalis in its human host. In fact, nasopharyngeal colonization with M. catarrhalis is common throughout infancy, and a high rate of colonization with this organism is associated with an increased risk of otitis media (10). The mechanism(s) essential for colonization of the nasopharyngeal mucosa by M. catarrhalis has not been determined conclusively, although a number of M. catarrhalis gene products that may be involved in this process have been identified in the past few years. The UspA1 and UspA2H proteins have both been shown to function as adhesins for human epithelial cells in vitro (22); more recently, the Hag (MID) protein was shown to bind to both A549 human lung cells (11,18) and primary cultures of human middle ear epithelial cells (18). The M. catarrhalis OmpCD protein has been shown to bind bot...

Young adult chinchillas were atraumatically inoculated with Moraxella catarrhalis via the nasal route. Detailed histopathologic examination of nasopharyngeal tissues isolated from these M. catarrhalis-infected animals revealed the presence of significant inflammation within the epithelium. Absence of similar histopathologic findings in sham-inoculated animals confirmed that M. catarrhalis was exposed to significant host-derived factors in this environment. Twenty-four hours after inoculation, viable M. catarrhalis organisms were recovered from the nasal cavity and nasopharynx of the animals in numbers sufficient for DNA microarray analysis. More than 100 M. catarrhalis genes were upregulated in vivo, including open reading frames ( M oraxella catarrhalis is a Gram-negative mucosal pathogen that has attracted increased interest within the scientific and medical communities for its role in several clinically significant human infections. The bacterium is a cause of upper respiratory tract infections including sinusitis and otitis media in healthy children (10, 17, 62). More recently, M. catarrhalis has been shown to be involved in conjunctivitis in children (9) and in acute exacerbations of chronic sinusitis in adults (11). Additionally, in adults, it is an important etiologic agent of exacerbations of chronic obstructive pulmonary disease (COPD) (54,55,62). It has been estimated that M. catarrhalis is responsible for up to 10% of exacerbations of COPD in the United States, a finding which translates into as many as 4 million infections per year (43).For M. catarrhalis to cause clinical disease, it typically must spread from its initial site of colonization in the nasopharynx into either the middle ear or the lower respiratory tract. It is believed that biofilm formation is an important event involved in colonization of the nasopharynx, and a recent study demonstrated that M. catarrhalis was present in a biofilm in the middle ear of children with chronic otitis media (25). It is likely that M. catarrhalis exists in a biofilm together with other normal flora in the nasopharynx. Until relatively recently, no studies had been performed in an in vivo environment to identify and better characterize the bacterial factors involved with colonization of the nasopharynx by M. catarrhalis. However, utilizing a chinchilla model, Luke et al. (36) demonstrated that type IV pili are important for colonization by M. catarrhalis in this animal model.Previous studies have examined the human antibody response to known surface proteins of M. catarrhalis as a surrogate for identification of bacterial genes expressed in vivo (for a representative example, see reference 42), and one study was able to detect mRNA from a small number of selected M. catarrhalis genes in nasopharyngeal secretions from young children with acute respiratory tract illness (39). The demonstration that the chinchilla nasopharynx can be colonized by M. catarrhalis (5, 36), together with the development of M. catarrhalis DNA microarrays (19,65), presented the op...

Ubiquitous surface protein A molecules (UspAs) of Moraxella catarrhalis are large, nonfimbrial, autotransporter proteins that can be visualized as a "fuzzy" layer on the bacterial surface by transmission electron microscopy. Previous studies attributed a wide array of functions and binding activities to the closely related UspA1, UspA2, and/or UspA2H protein, yet the molecular and phylogenetic relationships among these activities remain largely unexplored. To address this issue, we determined the nucleotide sequence of the uspA1 genes from a variety of independent M. catarrhalis isolates and compared the deduced amino acid sequences to those of the previously characterized UspA1, UspA2, and UspA2H proteins. Rather than being conserved proteins, we observed a striking divergence of individual UspA1, UspA2, and UspA2H proteins resulting from the modular assortment of unrelated "cassettes" of peptide sequence. The exchange of certain variant cassettes correlates with strain-specific differences in UspA protein function and confers differing phenotypes upon these mucosal surface pathogens.

The Moraxella catarrhalis ubiquitous surface proteins (UspAs) are autotransporter molecules reported to interact with a variety of different host proteins and to affect processes ranging from serum resistance to cellular adhesion. The role of UspA1 as an adhesin has been confirmed with a number of different human cell types and is mediated by binding to eukaryotic proteins including carcinoembryonic antigenrelated cellular adhesion molecules (CEACAMs), fibronectin, and laminin. A distinct difference in the ability of prototypical M. catarrhalis strains to adhere to CEACAM-expressing cell lines prompted us to perform strain-specific structure-function analyses of UspA1 proteins. In this study, we characterized CEACAM binding by a diverse set of UspA1 proteins and showed that 3 out of 10 UspA1 proteins were incapable of binding CEACAM. This difference resulted from the absence of a distinct CEACAM binding motif in nonadhering strains. Our sequence analysis also revealed a single M. catarrhalis isolate that lacked the fibronectin-binding motif and was defective in adherence to Chang conjunctival epithelial cells. These results clearly demonstrate that UspA1-associated adhesive functions are not universally conserved. Instead, UspA1 proteins must be considered as variants with the potential to confer both different cell tropisms and host cell responses.