BackgroundEyes in bilaterian metazoans have been described as being composed of either ciliary or rhabdomeric photoreceptors. Phylogenetic distribution, as well as distinct morphologies and characteristic deployment of different photopigments (ciliary vs. rhabdomeric opsins) and transduction pathways argue for the co-existence of both of these two photoreceptor types in the last common bilaterian ancestor. Both receptor types exist throughout the Bilateria, but only vertebrates are thought to use ciliary photoreceptors for directional light detection in cerebral eyes, while all other invertebrate bilaterians studied utilize rhabdomeric photoreceptors for this purpose. In protostomes, ciliary photoreceptors that express c-opsin have been described only from a non-visual deep-brain photoreceptor. Their homology with vertebrate rods and cones of the human eye has been hypothesized to represent a unique functional transition from non-visual to visual roles in the vertebrate lineage.ResultsTo test the hypothesis that protostome cerebral eyes employ exclusively rhabdomeric photoreceptors, we investigated the ultrastructure of the larval eyes in the brachiopod Terebratalia transversa. We show that these pigment-cup eyes consist of a lens cell and a shading pigment cell, both of which are putative photoreceptors, deploying a modified, enlarged cilium for light perception, and have axonal connections to the larval brain. Our investigation of the gene expression patterns of c-opsin, Pax6 and otx in these eyes confirms that the larval eye spots of brachiopods are cerebral eyes that deploy ciliary type photoreceptors for directional light detection. Interestingly, c-opsin is also expressed during early embryogenesis in all potential apical neural cells, becoming restricted to the anterior neuroectoderm, before expression is initiated in the photoreceptor cells of the eyes. Coincident with the expression of c-opsin in the presumptive neuroectoderm, we found that middle gastrula stage embryos display a positive photoresponse behavior, in the absence of a discrete shading pigment or axonal connections between cells.ConclusionsOur results indicate that the dichotomy in the deployment of ciliary and rhabdomeric photoreceptors for directional light detection is not as clear-cut as previously thought. Analyses of brachiopod larval eyes demonstrate that the utilization of c-opsin expressing ciliary photoreceptors in cerebral eyes is not limited to vertebrates. The presence of ciliary photoreceptor-based eyes in protostomes suggests that the transition between non-visual and visual functions of photoreceptors has been more evolutionarily labile than previously recognized, and that co-option of ciliary and rhabdomeric photoreceptor cell types for directional light detection has occurred multiple times during animal evolution. In addition, positive photoresponse behavior in gastrula stage embryos suggests that a discrete shading pigment is not requisite for directional photoreception in metazoans. Scanning photoreception of light inten...

Brachiopods are a lineage of invertebrates well known for the breadth and depth of their fossil record. Although the quality of this fossil record attracts the attention of paleontologists, geochemists, and paleoclimatologists, modern day brachiopods are also of interest to evolutionary biologists due to their potential to address a variety of questions ranging from developmental biology to biomineralization. The brachiopod shell is a composite material primarily composed of either calcite or calcium phosphate in close association with proteins and polysaccharides which give these composite structures their material properties. The information content of these biomolecules, sequestered within the shell during its construction, has the potential to inform hypotheses focused on describing how brachiopod shell formation evolved. Here, using high throughput proteomic approaches and next generation sequencing, we have surveyed and characterized the first shell-proteome and shell-forming transcriptome of any brachiopod, the South American Magellania venosa (Rhynchonelliformea: Terebratulida). We find that the seven most abundant proteins present in the shell are unique to M. venosa, but that these proteins display biochemical features found in other metazoan biomineralization proteins. We can also detect some M. venosa proteins that display significant sequence similarity to other metazoan biomineralization proteins, suggesting that some elements of the brachiopod shell-forming proteome are deeply evolutionarily conserved. We also employed a variety of preparation methods to isolate shell proteins and find that in comparison to the shells of other spiralian invertebrates (such as mollusks) the shell ultrastructure of M. venosa may explain the effects these preparation strategies have on our results.

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The origin of the mesoderm and the subsequent formation of the coelom in the larvae of the brachiopod species Notosaria nigricans and Calloria inconspicua is documented in detail at the ultrastructural level. During gastrulation, the blastocoel is completely displaced by the invaginating archenteron. Initial mesoderm formation was observed in late wedge-shaped to early three-lobed stages in both species. Proliferation of mesodermal cells from the archenteral epithelium mainly occurs in the dorsolateral (C. inconspicua) and caudolateral (N. nigricans) parts of the archenteral wall. Thus, a compact mesodermal cell mass pushes its way towards the subepidermal basal lamina. During further development of the larva, the mesoderm is separated from the archenteral epithelium by an extracellular matrix secreted frontad from behind. As a result, a single coelomic anlage is formed. The initial mesoderm in both species is of archenteral/endodermal origin. Considering endodermal origin as the crucial character for enterocoely, coelom formation through proliferation of a compact, endodermally derived mesodermal cell mass in Brachiopoda is clearly identified as enterocoely. Endodermal origin of mesoderm and, therefore, of the coelomic epithelium is hypothesised as a synapomorphy of Brachiopoda and Deuterostomia. As a consequence: (1) Brachiopoda and Deuterostomia are considered sister groups, (2) Brachiopoda group within Radialia and (3) lophophorates ("Tentaculata") remain as a paraphyletic grouping.

In this paper we report on recently collected specimens of glass sponges belonging to Farreidae Gray, 1872, and Tretodictyidae Schulze, 1886 (Porifera: Hexactinellida: Hexactinosida). All specimens represent new geographical records for their genera: Coral Sea for Aspidoscopulia Reiswig, 2002 (Farreidae) and Psilocalyx Ijima, 1927 (Tretodictyidae); north‐west Atlantic for Sarostegia Topsent, 1904 (Farreidae). Two new species, Aspidoscopulia australia Dohrmann, Göcke & Janussen sp. nov. and Aspidoscopulia ospreya Dohrmann, Göcke & Janussen sp. nov., are described. To investigate further the evolution of hexactinosidan sponges, we sequenced two nuclear (18S and 28S rDNA) and two mitochondrial [16S ribosomal rDNA, cytochrome oxidase subunit I (COI)] genes from these specimens, as well as from a recently described new species of Lonchiphora Ijima, 1927 (Farreidae). Besides corroborating the monophyly of Tretodictyidae, our molecular phylogenetic analyses support a clade of clavule‐bearing sponges with a farreoid dictyonal framework (i.e. Farreidae sensu stricto). In contrast, Sarostegia, which lacks these features, appears unrelated to this clade – instead our data are consistent with an earlier placement of this genus in Euretidae Zittel, 1877. We introduce formally the taxon Sceptrulophora Mehl 1992, and emend the classification of Hexactinosida to reflect this move and our new findings regarding the position of Sarostegia. Finally, we discuss implications of the molecular phylogeny for the evolution of sceptrules, the defining autapomorphy of Sceptrulophora. © 2011 The Linnean Society of London, Zoological Journal of the Linnean Society, 2011, 163, 1003–1025.

Fossil brachiopods are of major importance for the reconstruction of palaeoenvironmental conditions, particularly of the Palaeozoic. In order to better understand signals of ancient shell materials, modern analogue studies have to be conducted.Here we present C and O isotope data in conjunction with Mg/Ca, Sr/Ca, Mn/Ca and Fe/Ca data for nine modern rhynchonellid and terebratulid brachiopod species from tropical to intermediate latitudes and shallow to very deep marine settings. C and O isotope signals of most species suggest formation of secondary shell layers near or in isotopic equilibrium with ambient seawater. Some species -especially in the suborder Terebratellidina -show partly distinct disequilibrium signals, suggesting some degree of phylogenetic control on the expression of vital effects.Mn/Ca and Fe/Ca ratios measured in the modern species form a baseline to assess fossil preservation, but also yield environmental information Mg/Ca and Sr/Ca ratios follow previously observed patterns, with all studied brachiopod species comprising low-Mg calcite. Strong covariation of Sr/Ca ratios with Mg/Ca ratios is only observed in rhynchonellids and possibly one terebratulid species, potentially linking the incorporation behaviour of alkaline earth metals to phylogeny. Sr/Ca show a strong negative correlation with δ 13 C values in terebratellidinid species which exhibit major isotopic disequilibrium and also combined data from three localities for which two species were studied indicate such a negative relation. The observed covariation of Sr/Ca ratios with δ 13 C values may therefore become a useful tool to detect δ 13 C disequilibrium and to robustly estimate δ 13 C values of ambient DIC in deep time.

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