Abstract. Is it possible to symbolically express and analyse an individualbased model of disease spread, including realistic population dynamics? This problem is addressed through the use of process algebra and a novel method for transforming process algebra into Mean Field Equations. A number of stochastic models of population growth are presented, exploring different representations based on alternative views of individual behaviour. The overall population dynamics in terms of mean field equations are derived using a formal and rigorous rewriting based method. These equations are easily compared with the traditionally used deterministic Ordinary Differential Equation models and allow evaluation of those ODE models, challenging their assumptions about system dynamics. The utility of our approach for epidemiology is confirmed by constructing a model combining population growth with disease spread and fitting it to data on HIV in the UK population.
Mathematics Subject Classification (2000). Primary 92D25, 68Q85; Secondary 92D30.
A symbolic semantics for Full LOTOS in terms of symbolic transition systems is defined; the semantics extends the (infinitely branching) standard semantics by giving meaning to data parameterised behaviours, and provides a finitely branching representation for behaviours. Symbolic bisimulation is defined. This extends our previous work [14], making the definitions more amenable to automated reasoning and processes with recursion.
Vaccination programs for childhood diseases, such as measles, mumps and rubella have greatly contributed to decreasing the incidence and impact of those diseases. Nonetheless, despite long vaccination programmes across the world, mumps has not yet been eradicated in those countries: indeed, large outbreaks continue. For example, in Scotland large outbreaks occurred in 2004, 2005, and 2015, despite introducing the MMR (Measles-Mumps-Rubella) vaccine more than 20 years ago. There are indications that this vaccine-preventable disease is re-emerging in highly vaccinated populations. Here we investigate whether the resurgence of mumps is due to waning immunity, and further, could a booster dose be the solution to eradicate mumps or would it just extend the period of waning immunity? Using mathematical modeling we enhance a seasonally-structured disease model with four scenarios: no vaccination, vaccinated individuals protected for life, vaccinated individuals at risk of waning immunity, and introduction of measures to increase immunity (a third dose, or a better vaccine). The model is parameterised from observed clinical data in Scotland 2004–2015 and the literature. The results of the four scenarios are compared with observed clinical data 2004–2016. While the force of infection is relatively sensitive to the duration of immunity and the number of boosters undertaken, we conclude that periodic large outbreaks of mumps will be sustained for all except the second scenario. This suggests that the current protocol of two vaccinations is optimal in the sense that while there are periodic large outbreaks, the severity of cases in vaccinated individuals is less than in unvaccinated individuals, and the size of the outbreaks does not decrease sufficiently with a third booster to make economic sense. This recommendation relies on continuous efforts to maintain high levels of vaccination uptake.
A new semantics in terms of Mean Field Equations is presented for WSCCS (Weighted Synchronous Calculus of Communicating Systems). The semantics captures the average behaviour of the system over time, but without computing the entire state space, therefore avoiding the state space explosion problem. This allows easy investigation of models with large numbers of components. The new semantics is shown to be equivalent to the standard Discrete Time Markov Chain semantics of WSCCS as the number of processes tends to infinity. The method of deriving the semantics is illustrated with examples drawn from biology and from computing.
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