An increasingly popular approach used to identify arbuscular mycorrhizal (AM) fungi in planta is to amplify a portion of AM fungal small subunit ribosomal DNA (SSU-rDNA) from whole root DNA extractions using the primer pair AM1-NS31, followed by cloning and sequencing. We used this approach to study the AM fungal community composition of three common oak-woodland plant species: a grass (Cynosurus echinatus), blue oak (Quercus douglasii), and a forb (Torilis arvensis). Significant diversity of AM fungi were found in the roots of C. echinatus, which is consistent with previous studies demonstrating a high degree of AM fungal diversity from the roots of various hosts. In contrast, clones from Q. douglasii and T. arvensis were primarily from non-AM fungi of diverse origins within the Ascomycota and Basidiomycota. This work demonstrates that caution must be taken when using this molecular approach to determine in planta AM fungal diversity if non-sequence based methods such as terminal restriction fragment length polymorphisms, denaturing gradient gel electrophoresis, or temperature gradient gel electrophoresis are used.

We investigated diversity of ectomycorrhizas associated with Quercus garryana Dougl. ex Hook. (Oregon white oak, or Garry oak) at Whetstone Savanna Preserve in southern Oregon. Based on morphotyping and DNA restriction fragments, we described 39 ectomycorrhizas. The most common five morphotypes were found in 5% or more of 160 soil cores. Cenococcum geophilum, the most abundant morphotype, occurred in 75% of soil cores. Another common morphotype yielded a restriction fragment length polymorphism (RFLP) pattern similar to that of Tuber species. Uncommon morphotypes were responsible for the majority of ectomycorrhizal diversity on Q. garryana. Morphotype diversity of seedlings was more similar to that of their parent tree than to seedlings under other trees. Internal transcribed spacer (ITS) – RFLP patterns of ectomycorrhizas found beneath sporocarps did not match those of the sporocarps fruiting above ground. An understanding of the diversity of the ectomycorrhizal community on Q. garryana will enable us to compare ectomycorrhizas on other oak species and habitats; determine seasonality of ectomycorrhizal growth; evaluate treatments such as fire, grazing, invasion by exotic plants, and other anthropogenic disturbances; and aid restoration protocols.Key words: biocomplexity, biodiversity, ectomycorrhizas, hypogeous fungi, morphotypes, Peziza infossa, Tuber.

The diversity of ectomycorrhizal communities associated with Quercus garryana on and off serpentine soils was compared and related to landscape-level diversity. Serpentine soils are high in magnesium, iron, and heavy metals and low in fertility. In plant communities on serpentine soils, a high proportion of flowering plant species are endemic. At three sites with paired serpentine and nonserpentine soils in southwestern Oregon, we sampled Q. garryana roots and categorized ectomycorrhizas by morphotyping and by restriction fragment length patterns. Ectomycorrhizas were abundant at all sites; no single fungal species dominated in the ectomycorrhizas. Of 74 fungal species characterized by morphotype and pattern of restriction fragment length polymorphisms, 46 occurred on serpentine soils, and 32 were unique to serpentine soil. These species are potentially endemic to serpentine soil. Similarities in species composition between paired serpentine and nonserpentine soils were not significantly lower than among three serpentine sites or among three nonserpentine sites. We conclude that mycorrhizal communities associated with oaks on serpentine soil do not differ in species richness or species evenness from those on neighboring nonserpentine soil.