The sunflower family, Asteraceae, comprises 10% of all flowering plant species and displays an incredible diversity of form. Asteraceae are clearly monophyletic, yet resolving phylogenetic relationships within the family has proven difficult, hindering our ability to understand its origin and diversification. Recent molecular clock dating has suggested a Cretaceous origin, but the lack of deep sampling of many genes and representative taxa from across the family has impeded the resolution of migration routes and diversifications that led to its global distribution and tremendous diversity. Here we use genomic data from 256 terminals to estimate evolutionary relationships, timing of diversification(s), and biogeographic patterns. Our study places the origin of Asteraceae at ∼83 MYA in the late Cretaceous and reveals that the family underwent a series of explosive radiations during the Eocene which were accompanied by accelerations in diversification rates. The lineages that gave rise to nearly 95% of extant species originated and began diversifying during the middle Eocene, coincident with the ensuing marked cooling during this period. Phylogenetic and biogeographic analyses support a South American origin of the family with subsequent dispersals into North America and then to Asia and Africa, later followed by multiple worldwide dispersals in many directions. The rapid mid-Eocene diversification is aligned with the biogeographic range shift to Africa where many of the modern-day tribes appear to have originated. Our robust phylogeny provides a framework for future studies aimed at understanding the role of the macroevolutionary patterns and processes that generated the enormous species diversity of Asteraceae.

With contributions by: Abreu, Maria C.; Acevedo-Rodríguez, Pedro; Agra, Maria F.; Almeida Jr., Eduardo B.; Almeida, Gracineide S.S.; Almeida, Rafael F.; Alves, Flávio M.; Alves, Marccus; Alves-Araujo, Anderson; Amaral, Maria C.E.; Amorim, André M.; Amorim, Bruno; Andrade, Ivanilza M.; Andreata, Regina H.P.; Andrino, Caroline O.; Anunciação, Elisete A.; Aona, Lidyanne Y.S.; Aranguren, Yani; Aranha Filho, João L.M.; Araújo, Andrea O.; Araújo, Ariclenes A.M.; Araújo, Diogo; Arbo, María M.; Assis, Leandro; Assis, Marta C.; Assunção, Vivian A.; Athiê-Souza, Sarah M.; Azevedo, Cecilia O.; Baitello, João B.; Barberena, Felipe F.V.A.; Barbosa, Maria R.V.; Barros, Fábio; Barros, Lucas A.V.; Barros, Michel J.F.; Baumgratz, José F.A.; Bernacci, Luis C.; Berry, Paul E.; Bigio, Narcísio C.; Biral, Leonardo; Bittrich, Volker; Borges, Rafael A.X.; Bortoluzzi, Roseli L.C.; Bove, Cláudia P.; Bovini, Massimo G.; Braga, João M.A.; Braz, Denise M.; Bringel Jr., João B.A.; Bruniera, Carla P.; Buturi, Camila V.; Cabral, Elza; Cabral, Fernanda N.; Caddah, Mayara K.; Caires, Claudenir S.; Calazans, Luana S.B.; Calió, Maria F.; Camargo, Rodrigo A.; Campbell, Lisa; Canto-Dorow, Thais S.; Carauta, Jorge P.P. †; Cardiel, José M.; Cardoso, Domingos B.O.S.; Cardoso, Leandro J.T.; Carneiro, Camila R.; Carneiro, Cláudia E.; Carneiro-Torres, Daniela S.; Carrijo, Tatiana T.; Caruzo, Maria B.R.; Carvalho, Maria L.S.; Carvalho-Silva, Micheline; Castello, Ana C.D.; Cavalheiro, Larissa; Cervi, Armando C. †; Chacon, Roberta G.; Chautems, Alain; Chiavegatto, Berenice; Chukr, Nádia S.; Coelho, Alexa A.O.P.; Coelho, Marcus A.N.; Coelho, Rubens L.G.; Cordeiro, Inês; Cordula, Elizabeth; Cornejo, Xavier; Côrtes, Ana L.A.; Costa, Andrea F.; Costa, Fabiane N.; Costa, Jorge A.S.; Costa, Leila C.; Costa-e-Silva, Maria B.; Costa-Lima, James L.; Cota, Maria R.C.; Couto, Ricardo S.; Daly, Douglas C.; De Stefano, Rodrigo D.; De Toni, Karen; Dematteis, Massimiliano; Dettke, Greta A.; Di Maio, Fernando R.; Dórea, Marcos C.; Duarte, Marília C.; Dutilh, Julie H.A.; Dutra, Valquíria F.; Echternacht, Lívia; Eggers, Lilian; Esteves, Gerleni; Ezcurra, Cecilia; Falcão Junior, Marcus J.A.; Feres, Fabíola; Fernandes, José M.; Ferreira, D.M.C.; Ferreira, Fabrício M.; Ferreira, Gabriel E.; Ferreira, Priscila P.A.; Ferreira, Silvana C.; Ferrucci, Maria S.; Fiaschi, Pedro; Filgueiras, Tarciso S.; Firens, Marcela; Flores, Andreia S.; Forero, Enrique; Forster, Wellington; Fortuna-Perez, Ana P.; Fortunato, Reneé H.; Fraga, Cláudio N.; França, Flávio; Francener, Augusto; Freitas, Joelcio; Freitas, Maria F.; Fritsch, Peter W.; Furtado, Samyra G.; Gaglioti, André L.; Garcia, Flávia C.P.; Germano Filho, Pedro; Giacomin, Leandro; Gil, André S.B.; Giulietti, Ana M.; Godoy, Silvana A.P. ; Goldenberg, Renato; Gomes da Costa, Géssica A.; Gomes, Mário; Gomes-Klein, Vera L.; Gonçalves, Eduardo Gomes; Graham, Shirley; Groppo, Milton; Guedes. Juliana S.; Guimarães, Leonardo R.S.; Guimarães, Paulo J.F.; Guimarães, Elsie F.; Gutierrez, Raul; Harley, Raymond; Hassemer, Gus...

Comprising more than 25 000 species, the Sunflower Family (Compositae or Asteraceae) is the largest family of flowering plants. Many of its lineages have experienced recent and rapid radiations, and the family has a deep and widespread history of large-scale gene duplications and polyploidy. Many of the most important evolutionary questions about the family's diversity remain unanswered due to poor resolution and lack of support for major nodes of the phylogeny. Our group has employed a phylogenomics approach using Hyb-Seq that includes sequencing 1000 low-copy number nuclear markers, plus partial plastomes for large numbers of species. Here we discuss our progress to date and present two phylogenies comprising nine subfamilies and 25 tribes using concatenated and coalescence-based analyses. We discuss future plans for incorporating high-quality reference genomes and transcriptomes to advance systematic and evolutionary studies in the Compositae. While we have made great strides toward developing tools for employing phylogenomics and resolving relationships within Compositae, much work remains. Recently formed global partnerships will work to solve the unanswered evolutionary questions for this megafamily.