ResumenSe presenta una lista comentada de los mamíferos terrestres, acuáticos y marinos nativos de Perú, incluyendo sus nombres comunes, la distribución por ecorregiones y los estados de amenaza según la legislación nacional vigente y algunos organismos internacionales. Se documenta 508 especies nativas, en 13 órdenes, 50 familias y 218 géneros; resultando el Perú como el tercer país con la mayor diversidad de especies en el Nuevo Mundo después de Brasil y México, así como quinto en el mundo. Esta diversidad incluye a 40 didelfimorfos, 2 paucituberculados, 1 sirenio, 6 cingulados, 7 pilosos, 39 primates, 162 roedores, 1 lagomorfo, 2 soricomorfos, 165 quirópteros, 34 carnívoros, 2 perisodáctilos y 47 cetartiodáctilos. Los roedores y murciélagos (327 especies) representan casi las dos terceras partes de la diversidad (64%). Cinco géneros y 65 especies (12,8%) son endémicos para Perú, siendo la mayoría de ellos roedores (45 especies, 69,2%). La mayoría de especies endémicas se encuentra restringida a las Yungas de la vertiente oriental de los Andes (39 especies, 60%) seguida de lejos por la Selva Baja (14 especies, 21,5%). Se comenta la taxonomía de algunas especies, cuando éstas discrepan de la taxonomía aceptada. AbstractWe present an annotated list for all land, aquatic and marine mammals known to occur in Peru and their distribution by ecoregions. We also present species conservation status according to international organizations and the legal conservation status in Peru. At present, we record 508 species, in 13 orders, 50 families, and 218 genera, making Peru the third most diverse country with regards to mammals in the New World, after Brazil and Mexico, and the fifth most diverse country for mammals in the World. This diversity includes 40 didelphimorphs, 2 paucituberculates, 1 manatee, 6 cingulates, 7 pilosa, 39 primates, 162 rodents, 1 rabbit, 2 soricomorphs, 165 bats, 34 carnivores, 2 perissodactyls, and 47 cetartiodactyls. Bats and rodents (327 species) represent almost two thirds of total diversity (64%) for Peru. Five genera and 65 species (12.8%) are endemics to Peru, with the majority of these being rodents (45 species, 69,2%). Most of the endemic species are restricted to the Yungas of the eastern slope of the Andes (39 species, 60%) followed by Selva Baja (14 species, 21.5%). The taxonomic status of some species is commented on, when those depart from accepted taxonomy. The marsupial Marmosa phaea; the rodents Melanomys caliginosus, M. robustulus, and Echinoprocta rufescens; the shrew Cryptotis equatoris; the bats Anoura fistulata, Phyllostomus latifolius, Artibeus ravus, Cynomops greenhalli, Eumops maurus, and Rhogeessa velilla; and the carnivore Nasuella olivacea are first records of species occurrence in Peru. Finally, we also include a list of 15 non-native species.Keywords: Mammals, Peru, diversity, endemism, conservation. IntroducciónRecientemente, dos volúmenes de gran trascendencia para la mastozoología neotropical han sido publicados: Mammal Species of the World, en su tercera edición po...
Anticipating how epidemics will spread across landscapes requires understanding host dispersal events that are notoriously difficult to measure. Here, we contrast host and virus genetic signatures to resolve the spatiotemporal dynamics underlying geographic expansions of vampire bat rabies virus (VBRV) in Peru. Phylogenetic analysis revealed recent viral spread between populations that, according to extreme geographic structure in maternally inherited host mitochondrial DNA, appeared completely isolated. In contrast, greater population connectivity in biparentally inherited nuclear microsatellites explained the historical limits of invasions, suggesting that dispersing male bats spread VBRV between genetically isolated female populations. Host nuclear DNA further indicated unanticipated gene flow through the Andes mountains connecting the VBRV-free Pacific coast to the VBRV-endemic Amazon rainforest. By combining Bayesian phylogeography with landscape resistance models, we projected invasion routes through northern Peru that were validated by real-time livestock rabies mortality data. The first outbreaks of VBRV on the Pacific coast of South America could occur by June 2020, which would have serious implications for agriculture, wildlife conservation, and human health. Our results show that combining host and pathogen genetic data can identify sex biases in pathogen spatial spread, which may be a widespread but underappreciated phenomenon, and demonstrate that genetic forecasting can aid preparedness for impending viral invasions.Desmodus | zoonotic disease | forecasting | sex bias | spatial dynamics
Viruses infect all forms of life and play critical roles as agents of disease, drivers of biochemical cycles and sources of genetic diversity for their hosts. Our understanding of viral diversity derives primarily from comparisons among host species, precluding insight into how intraspecific variation in host ecology affects viral communities or how predictable viral communities are across populations. Here we test spatial, demographic and environmental hypotheses explaining viral richness and community composition across populations of common vampire bats, which occur in diverse habitats of North, Central and South America. We demonstrate marked variation in viral communities that was not consistently predicted by a null model of declining community similarity with increasing spatial or genetic distances separating populations. We also find no evidence that larger bat colonies host greater viral diversity.Instead, viral diversity follows an elevational gradient, is enriched by juvenile-biased age structure, and declines with local anthropogenic food resources as measured by livestock density. Our results establish the value of linking the modern influx of metagenomic sequence data with comparative ecology, reveal that snapshot views of viral diversity are unlikely to be representative at the species level, and affirm existing ecological theories that link host ecology not only to single pathogen dynamics but also to viral communities. K E Y W O R D SChiroptera, community assembly, demography, Desmodus rotundus, elevational gradient, infectious diseases, population structure, shotgun metagenomics, virome, wildlife disease | 27 BERGNER Et al.
Microbial communities play an important role in organismal and ecosystem health. While high‐throughput metabarcoding has revolutionized the study of bacterial communities, generating comparable viral communities has proven elusive, particularly in wildlife samples where the diversity of viruses and limited quantities of viral nucleic acid present distinctive challenges. Metagenomic sequencing is a promising solution for studying viral communities, but the lack of standardized methods currently precludes comparisons across host taxa or localities. Here, we developed an untargeted shotgun metagenomic sequencing protocol to generate comparable viral communities from noninvasively collected faecal and oropharyngeal swabs. Using samples from common vampire bats (Desmodus rotundus), a key species for virus transmission to humans and domestic animals, we tested how different storage media, nucleic acid extraction procedures and enrichment steps affect viral community detection. Based on finding viral contamination in foetal bovine serum, we recommend storing swabs in RNAlater or another nonbiological medium. We recommend extracting nucleic acid directly from swabs rather than from supernatant or pelleted material, which had undetectable levels of viral RNA. Results from a low‐input RNA library preparation protocol suggest that ribosomal RNA depletion and light DNase treatment reduce host and bacterial nucleic acid, and improve virus detection. Finally, applying our approach to twelve pooled samples from seven localities in Peru, we showed that detected viral communities saturated at the attained sequencing depth, allowing unbiased comparisons of viral community composition. Future studies using the methods outlined here will elucidate the determinants of viral communities across host species, environments and time.
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