Belowground biodiversity Taxonomy Endemism (6.4 and 7.7%) proportion of globally described diversity. Endemism is high for most groups, ranging from 33-92%. However, major knowledge gaps exist for most soil biota groups. While sampling has been relatively comprehensive in some areas for a few groups (particularly those with direct socioeconomic impacts), the Nama-Karoo, Northern Cape and Eastern Cape are poorly sampled. Natural soils in biodiversity hotspots, such as the Fynbos Biome, are also understudied. We argue that a more integrative approach to acquiring foundational knowledge in soil biodiversity is needed if applied soil research is to be effective in ensuring sustainable soil health. Considerable investment will be required to bring our understanding of the soil biodiversity in this megadiverse region to a level where the Millennium Development Goals can be reached.

Third-stage larvae of the nematode genus Contracaecum Railliet et Henry, 1912 (Contracaecum sp.) were, for the first time, recorded from the abdominal cavity of the threatened endemic freshwater fish Sandelia capensis (Cuvier) in South Africa. The larval morphology indicated that they belong to a species of which the adults are parasitic in fish-eating birds. Although the nematode seems to be a common parasite of S. capensis in the locality under study (prevalence 23%), the low intensity of infection recorded (1 to 4) and the generally known low pathogenicity of Contracaecum larvae in fish indicate that this parasite probably does not represent a danger to the local population of this threatened fish species.

In South Africa, acaricides are widely used for tick control but very few reports are available on resistance development of Rhipicephalus (Boophilus) decoloratus Koch to chemical control on commercial farming systems in Africa, south of the Sahara. Resistance to different acaricide classes reported over the years was mostly from localised communal farming systems. This report addresses the lack of available information on resistance development by reviewing results found during a National Tick Resistance Survey carried out from 1998 to 2001, laying the foundation for more recent research on resistance development, and the evolution of resistance over the years. One hundred and eighty R. decoloratus populations were randomly collected from commercial farming systems, covering most of the provinces of South Africa. Larval immersion tests were used to determine phenotypic resistance for each tick population and 6.6% of the populations tested were found to be resistant to amitraz, 35.5% to cypermethrin, and 36.1% to chlorfenvinphos. Multi-resistance to all three acaricides was found in 1.2% of populations and a further 25.8% of the populations were resistant to two acaricides. The detection of resistance of Rhipicephalus (Boophilus) species to currently used or new acaricides is an essential tool in resistance management. The acaricides tested for the resistance of R. decoloratus during the survey are currently still in use in South Africa and these historical results, never published before, can be valuable and can act as reference data to determine the evolution of resistance development to acaricides in more recent studies.

The Bakwena Cave houses a variety of organisms that form an intricate and interdependent food web. This cave is utilised as a permanent roost by a colony of Natal clinging bats. The bat guano and allochthonous plant material that fall into the cave from outside, form the basis of the ecology inside the cave which may be considered a typical example of a detritus ecosystem. Decomposers such as bacteria and fungi are responsible for the decay of the guano and plant detritus which, in turn, are utilised by several organisms, including nematodes and mites, as food source. These animals form the next trophic level which is utilised by predatory arthropods as food source. The Bakwena Cave is one of the few dolomitic caves in South Africa that provide access to the water table. The groundwater houses several types of organisms, including bacteria, fungi and animals – primarily nematodes and crustaceans. The Bakwena Cave is also the type locality for freshwater amphipods in Southern Africa. This unique and sensitive ecosystem is primarily dependent on bat guano. The grassland surrounding the cave is utilised by the bats as foraging area and is currently threatened by urban development and the resulting habitat fragmentation and destruction. A cascade of extinctions of the cave-dwelling organisms will follow if the bats abandon the cave.

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The development of tick resistance to chemical control plays a major role in the increasing global economic impact of ticks on cattle farming. Reports on acaricide resistance of Rhipicephalus decoloratus, endemic to Africa and South Africa, are relatively few compared to the closely related and globally distributed Rhipicephalus microplus. In South Africa, ectoparasite control became the sole responsibility of each commercial producer when compulsory dipping was phased out from 1984. Different acaricidal management strategies resulted in the simultaneous development of resistance to various acaricide groups. The establishment of a Pesticide Resistance Testing Facility provided the opportunity to test Rhipicephalus (Boophilus) populations, submitted from all over South Africa, for resistance where failure of chemical control was experienced. The number of populations resistant to cypermethrin (CM) was significantly higher than those tested as resistant to amitraz (AM), or chlorfenvinphos (CFVP). No significant difference was found between the number of populations resistant to AM and CFVP. The evolution of R. decoloratus resistance at the end of a 12 year period indicated a stable but high prevalence of 90% overall resistance to CM. The same trend was seen for AM-resistant R. decoloratus populations but at a lower level of just over 40%. In contrast, CFVP resistant R. decoloratus populations showed a decreasing trend with near-total reversion to susceptibility. Multi-resistance was present in more than 50% of populations tested with the highest incidence in the Eastern Cape, KwaZulu-Natal, and Western Cape provinces.

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Prionchulus jonkershoekensis n. sp. is described from South Africa and illustrated using morphological, morphometric, and molecular techniques. This species is characterized by its body length (1.78-2.14 mm); the size of buccal cavity (38-44 × 24-31 µm), lower dorsal tooth position in relation to buccal cavity base, the position of amphidial aperture just above dorsal tooth apex, pars proximalis vaginae with almost straight walls, and tail 144-158 µm long with sickle shaped posterior third part. Phylogenetic analyses based on 18 S rDNA and 28 S rDNA of P. jonkershoekensis n. sp. revealed close relationships of the new species with Prionchulus punctatus and Prionchulus muscorum. This is also an additional geographical record for the genus from South Africa.