In this article, we report the geometries and properties of the structural isomers obtained from a random walk of the potential energy surface of the water tetramer. Eight structures were obtained after B3LYP/6-311ϩϩG** and MP2/6-311ϩϩG** optimization of 59 candidate structures generated from a stochastic search of the PM3 conformational space. The random search was carried out using a recently proposed modified Metropolis acceptance test in the simulated annealing procedure. Highly correlated CCSD(T)/6-311ϩϩG** energies on the MP2 geometries were calculated and used to determine relative stabilities and to estimate isomer concentrations. We obtained three different geometrical motifs: planar cyclic tetramers, planar cyclic trimers interacting with an extra off-plane water molecule, and a bicycle-like structure. Our CCSD(T) energies, in agreement with previous reports, predict the global minimum to be a planar cyclic tetramer with hydrogen atoms alternating above and under the plane.
In this paper we report the results obtained by an implementation and application of the simulated annealing optimization procedure to the exploration of the conformational space of small neutral and charged lithium clusters (Li(n)(q), n = 5, 6, 7; q = 0, +/-1) and of the bimetallic lithium/sodium clusters (Li5Na) in their lowest spin states. Our methodology eliminates the structure guessing procedure in the process of generating cluster configurations. We evaluate the quantum energy, typically with the Hartree-Fock Hamiltonian, of randomly generated points in the conformational space and use a modified Metropolis test in the annealing algorithm to generate candidate structures for atomic clusters. The structures are further optimized by analytical methods (gradient following) at the Møller-Plesset second order perturbation theory level (MP2), in conjunction with basis sets including polarization functions with and without diffuse functions. High accuracy ab initio energies at the coupled clusters level, with single, double, and triple substitutions from the Hartree-Fock determinant (CCSD(T)), on the MP2 geometries were calculated and used to establish the relative stability of the isomers within each potential energy surface. Various cluster properties were computed and compared to existing values in order to validate our methods. Our results show excellent agreement with previous experimental and theoretical reports. Even at these small sizes, evidence for 10 new structures never reported before for the lithium clusters and four new structures for the bimetallic clusters is presented.
A staggering structural diversity for the microsolvation of F- with up to six water molecules is uncovered in this work. Given the structural variety and the proximity in energy among several local minima, we show here that in order to match available experimental data, statistical averages over contributing structures are needed, rather than assigning experimental values to isolated structures. Our results suggest that the formal charge in F- is strong enough as to induce partial and total dissociation of water molecules and to alter the nature of the surrounding network of water to water hydrogen bonds. We provide an extensive analysis of bonding interactions under the NBO and QTAIM formalisms, our main results suggest a complex interplay between ionic and covalent characters for the FH interactions as a function of the separation between the atoms.
Descriptors of chemical bonding derived from five different analysis tools based on quantum mechanics (natural charges, electron density differences, atoms in molecules (AIM), natural bond orbitals (NBO), and non-covalent interactions (NCI) index) consistently afford a picture of a wall of weak, non-covalent intermolecular interactions separating anionic Ibuprofen from the environment. This wall, arising from the cumulative effect of a multitude of individual weak charge transfer interactions to the interstitial region between fragments, stabilizes the drug at all equilibrium positions in the free energy profile for its insertion into model cell membranes. The formal charge in anionic Ibuprofen strengthens all intermolecular interactions, having a particularly strong effect in the network of water to water hydrogen bonds in the solvent. Electron redistribution during the insertion process leads to a sensible reduction of electron delocalization in both the CO2 – group and the aromatic ring of Ibuprofen. Here, we conclusively show that, despite their purely classical origin, randomly chosen configurations from molecular dynamics simulations provide deep insight into the purely quantum nature of bonding interactions.
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